Detail information of BGIOSGA024675_circ_igg.1


General Information
CircRNA Name BGIOSGA024675_circ_igg.1
ID in PlantcircBase osi_circ_007085
Alias 7:5081562|5083943
Organism Oryza sativa ssp. indica
Position chr7: 5081562-5083943  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATGTGCACATCATCTAGAGTACTATTGGGAGTGATAAGCGCCTCCTCGAGGTCCTCCGCCGT
GAACTCCCCCGAGATGTTCAGCAAAGGCCGGTACACtgcaacatcatcaaactcgtcaaagttg
gatgcgacagtttcccactggtaggacacaactggaagaattatagaccctcctttccccctag
atcttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCAACATCATCAAACTCGTCAAAGTTGGATGCGACAGTTTCCCACTGGTAGGACACAACTGGA
AGAATTATAGACCCTCCTTTCCCCCTAGATCTTTTTCCTGGCTCTTTCTTCAGCTGTTCCACTC
GTCTAATTTCACGATATAATCTATGCCCGAGAATCGGATCATCTTCATACCTGTTCTGAAAGAC
TTGATCAGCACACCCCTTAATGGGATCGGAACAAGAAACTTCCAGGACAGTCCATTCAAAAATA
GCAACTAGGAAAAAATACCCACCAGTATGAGATTCCATAGGCATCACCCCCTATTCGTTCTTTA
CGAAAGGTAGAAAGGTCATAGCCATGCTTTAGGGAACTGTCAATGAAATTCCGGATATCCTCTT
GCTGCAAAATATATGCTTAAGAATCAGTCATCTAGTTAAGCTCATGCGATTCAAAACCTAAAAT
TGCCTCTCTCTTTTTTCCAGATATATCCAAAACAACAATAATCCCAACCTAGCTATTACGAGCA
TGTCCCCTGCAGATAGTACCTCTGTTTTTTTCACATATAAAATTTTAATATTTTTGCATACCTT
GGTGAGTTAAGATTTCAACAGACTTGTGCTCATGCCTCTCTTGCTCCACTTTATTTAATTGCCC
AAGAGAGCAGGCAAATTATGTGTTCACTATCAACTATCAAGCATGTATTTTTATTAAACTTCAG
GAAGTAGTTCAAATCATCTTCAATTTTATTTTTCTACTATGAAGCATCAGGGTTAATGCAGAAT
CCTCTACTCTACAGTTGTGCAAGGAGAAAGGGACAATAGGCAATATCCTACACATATGTATAAA
AGAGGAAGTGTATCTTGAAAAAGAAATTCTACAATTTTAATTGGAACTAGTAGTTATCCCTTAC
ACAGAATGCACATCATAGAAAAGTAACAGCTGCTTTCATTTTTCAAAGGAATAATCGTTTAGCA
ACAATGTATCTTTAACTTCTGGCAGGTTCATATGCAGGAATAGACAAAGGGTATTATTGTTCCC
TTTTTAATGAATTGATGAAGAATTTCCTTTGGCACCAGAATTGTACAGGTCGATGAAAATGTTT
CAACAATATTATGCAGAAGCGGATTAGTGGATGAAATACCAGTCATCATATTCAAGTGTTGTTT
TCAACATTGCAAGGACACGAATGTGGGATAACGGGATACAAATGACAAGGGATGAGATTTTATT
CAGAAGAATGTCAACATGATTATAACAATATACTACAGCGCGTATTAGAAAATTTCAAAAAATC
AAGTCATTTAGACAAACTTCCTTCGGTTTTATACTAGGAAAGGACAAGAAAAATAAGCACGTAC
CTCGACACGTATATCGCATATTGCTTTCAAGATAATTAAACGAGTCGCCGGTTCTAGAACCTTG
TATGCTTCAATTTCAGTTCTGTGGAAGATGAAACAGTTGGGAAAACAATGCTGAGGAAAAAAAT
ATACATTTGTAGCAGGAGATTACACAATGATTTCTTGTGAGCTAAACTAACCCATGTGATGCAA
CAATTGGTATATCACCTTCTGCAACCTGCAGTTCAGACAGTTAATACCTCACCAATTGAATGGA
ATCTGCAACCATTATTTATCAAAGTTGTCTGAAACATAGAATATTAATCATATACCCAATGCCA
CCAATCCCTTAGCTTTCTACATAGGACGGTCACCCAGGTTCCACGTCCCATAGCCATGCGGGTT
ACTGGAGGAATTGACTGCGTGTGCAATAAAAATCATGAGATTCCATGGAGAACTTTCACATACT
ATTACATTTTTATTTGAGCATAAAATATCTACTAACATACAGATGCATAATGCAGAGTCTATCT
GATAGCTCTAATCGAATAGCGTGTATTGTCTAAGAAGACATCAAAATAGGAGTTACAAACAACA
TGATCAAATACAAATATACACAGAAATGTTAACGAGGTATATTCGAGTTATGGCAGAGTAAGCA
TAAGCCCAAGAACAACATGTAGCTGCTATTATGGCATTTTCTCATACATTAAATGTAAAAATCA
GCAAAAACGTCACTATAACTGGCAACAGCGCTAAAACTCAAAGTCACAAAGAACCCAAAAAAAT
TATAATTATTACTTCTTGCAAGCACAAGGACACAACTTCTATCCTCTCTCTGATGATGAACCAA
TGAACCACGTGGAGGTAGAACTACAGACAGAGTATTCCAGCCTATAGAGCAGCAACAAATTCGA
CATGAACTTAACAGCCCGAGGGCTCACTCACCTTTAGGAGTGGCATGTGCACATCATCTAGAGT
ACTATTGGGAGTGATAAGCGCCTCCTCGAGGTCCTCCGCCGTGAACTCCCCCGAGATGTTCAGC
AAAGGCCGGTACAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021