Plant Circular RNA Database

Detail information of A02_circ_ag.5

			
						 General Information
					
						CircRNA Name
						A02_circ_ag.5
					
						ID in PlantcircBase
						ghi_circ_000221
					
						Alias
						ghr_circ_0000156
					
						Organism
						
							Gossypium hirsutum						
					
						Position
						
							chrA02: 73380103-73383864  JBrowse»						
					
						Reference genome
						
							v1.1						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							A02_circ_ag.3 A02_circ_ag.4 A02_circ_ag.6 						
					
						Support reads
						NA
					
						Tissues
						fiber/ stem
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	A02_circ_ag.5
ID in PlantcircBase	ghi_circ_000221
Alias	ghr_circ_0000156
Organism	Gossypium hirsutum
Position	chrA02: 73380103-73383864 JBrowse»
Reference genome	v1.1
Type	ag-circRNA
Identification method	find_circ; CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	A02_circ_ag.3 A02_circ_ag.4 A02_circ_ag.6
Support reads	NA
Tissues	fiber/ stem
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTTTAGAAAATATGAAAGAATACCGAAGAGCAACAGTTCCAGGACGGTAGCGATGAGGCTTCTT
CACACCACCGGTGGTTGGGGCAGATTTACGGGCAGCccttggtagcaagttgcttccttggagc
cttcccaccagtcgacttacgggctgtctgcttggtacgggccatctctgcaaagatatgaata
atttcaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCTTGGTAGCAAGTTGCTTCCTTGGAGCCTTCCCACCAGTCGACTTACGGGCTGTCTGCTTGGT
ACGGGCCATCTCTGCAAAGATATGAATAATTTCAGAAGACAATTAAAAAATATAAAACTAGTTA
CATTTTCTCATTAACTACCAAACATAACACGGAAAAGCCAGATCTTAGATAATTACTGTATAAT
TCCCAAAAGCCCTAATCTTCAAACTAGAAAACTTCTAAGCCAAAAAAGAAAATCAGAATAGGAT
TTAAAACAGAAGTCGAAGGTCCTAAATGAACTCAGAACAGAATCAGAGTGCCCTAATTATAAAT
AAATTCAACCTTACCTCCCCTATTTCCCTAATTCAACTTAAACTACATGAAATACAAAAACAAA
TTAAAAGAATCAGAATTTACAAACCCTAATTTACTATAAAAATAAACAAATAAATAAGAGCCAA
GAGAGCGAGGGAAGGTTACTAACTCAAAAATCTGAGACAAACGCTTATTTATCTTCTGGTTCAA
ATGTTCGAAAAGGATAGCAATTAAGAGGTATTTATAGAAGGTTGGGGGGTTTGTTAATGAAGTT
GATCCGACGGTTCGGATATACTATCCGTGTGTTTCTTTTGTACGAGATCTGACGGTAAAAACTG
TCACAAGTTGTGTTTTCTGAGAGGAAAAGGACGGTTGGGATTAGATTATAGAGGGAAGACACGG
ATCGTGATGGTTTGATTGCTTGATTCTTATTGGTCGACTAAAATTGCTTTTTAGCACAAATGTT
TTTAAGGTTGGATTTACCACAGAAACTTGGATTAATTTAATGTTCAATATAGAAGAATTTGAGT
TCAAGTATCCTGAAGTGTATTATCTTTATATTTATGGGATGGGAGGGGTTTTAGATAGTTTTAA
ATATTGTGTAAAAAAAACAGATATGATCATAATTTATAATGAGATTATTAAAAAATATACATAG
CAAGTTTGATTTGGATTAACATTTACTTATAAATAGGTGAATGCATGGGTTAAATTATGAAAGT
TGTTGTAATTTGGTATTAGTCCTTAATAGATTTAAGAAAGAATTTTGAGTAGTTTGAACTTAGA
TTTTATTATAATTTTGATAGTAAAATTATAAGATTATTTAAATTTATAAAAATCATAATTTTTT
TTGGCAAAAGGGATTAAAAAACTCTTAATGAAAATTAATAAATCAATTTACATCTTAAAAAAAA
TATATGCACAGAATTGAAGTCCCAAAAGCAAAATTAAAAAAAATAAAAAATAAAACTCTTTCAT
TACCAATAATTTTTGTTTAAAAGAGGGGAGAAATAGACATCAAAGCTCCTTTTGATGTAACATA
TAAATTTGTTTCGCTTCATTCCAAACACAATTCAAATATATATTAACAAAAATGGTAAAAAATT
ATAATAATTAATAGTAAAAATAAAATTTAAAAATTATTTTTAAAAAAGAGTAAGAAGTGTTTTG
AAGAAAATTTTTATTTGTCCTTAATAACATGTGATATTTTGGCTTATAATTGACTATTTTGACA
AATCTTTTCATAGTTAACAATATTTATGATCTTTAATCATTTTTAACATTCTTTATAATTTTAT
ACAAGATTTTAAATATATTACAATATTTTCAATTAGGTCAAATAAATATAAACAGATAAATAAT
CAACTTGAGCCTTGATTTTTGGGCAAATTTTTTTTCTTAAGATATTAACTAATTAATTATATAG
AAATACTCGGAAAAGAAAAACATCCTCTATCTTGTCTAATTTTAGAAAGGTTAGAAACGACATA
GGAAGGGTATCAAAAATCTACAAATCCTTTTTCTAATTAAAATTAGTTTGACTAAATAGTCTGT
AGCTTGATTTACTCTCTAGGAATATAAAGCAAGAACCACCGTTTTTCTTGTGCCAAAATATTTT
GTATATATCTAATCAAAGTTGAATTTGACGTGCTAGACTATAGGAACGCTTCCTTAATTAGTTT
TAACAACCTCCAAACTATAAGATTTGATTATTCCATTATCAAAGGCCTTTACATTAGGTTAGCT
TGAGACTATCCAAAATATCCTAAAGTTCGGCATCAATGACTGAACACTTTTCTAAATAACAGTT
ATAGCCAAGACACCCATTCCCATTCTCATCACAAATTACTCCCCCGAAAACTACATTACCTAAT
TAATTTCCTTCCAAGGCTCATTGGGCCAAATTTGTTTTTAGAAATAATGACCTATTCACGTTAC
AATTTAATAAAAAAATTTTAATTAACCATTTAATTACTCGTTTCTTTAATTTTAGAAGTTAAGT
TTTTTTATCAAAACATCTTAAAATGACTGAAATTTTTAACACTCTGAATCTCAACATTTGAAAT
TAATTAATTTTTAATATTTTTAATATTGTTTATTTTACAATTTTTTAAATAATTCTAAGAATTT
TCAATATTTTAAAAAATAACTAATTGTTGATGTTATAGTTTCAACTTTAATTTTCGAATAATTT
GAAAAAAGATACAAATATAAATATTTAAAAATAAAAAAATTAATTTGAAAGCTAAAATGATTTT
TTTTCCAAAGTTGGCCTAAATAAGTAATTATACATTTTTTCTAATATCTCAAATTATTAAATAA
GAAGTATCTTAGGTAAATATAGAATCAACTTCAAAATCTTGGAACCAAAAATTTCACCTTAAAT
GCCACTTGTAAGCACAAAACATCTTGAGCCTCTTAACAAAAGCACCAATATCATTTCTTTATTT
TACGCTGACCACAGTAATAAGATACGCTGAAAATCACGCATCCCACTTTTCCCAAGGACACATT
TTCATTACCGACCTGGTTCAATCGCTCTTTCCGGCAGGTTTACAAATTTAAGCCCATAAATTTA
AACATGCCCCCTCCAAAATATTCTCTTCACGGGCTGATTCCACAACACGACTAAACAAGATTTG
CTTTACAATATATGAATAAATATTCGAAGTCACTAGTTTTGATCAGGAAGCACATTTAAACAAA
CTATACCAGACATGAGTGTTCTTAACCATTAAAATATCAGACATCACACTCTCCACCATAACCC
CATTTCATCATAACATTGAACCTCAGCACTAAGATAAACCTATCTTTTAATATTGGCCTAAAAG
AGGAATAAAATTAAACATAAAAAAAAAATAGTACAATACATCTGCCTAACAACAAACAACAGTT
TCTCCATTCTAAGTTAAGTGATCAACACACTTGGAAATTAAGCACGCTCGCCCCTGATCCTACG
AGCCAACTGGATGTCCTTGGGCATTATAGTAACACGCTTGGCGTGGATCGCACACAGGTTGGTG
TCTTCAAAGAGACCCACAAGGTATGCTTCTGCAGCTTCCTGAAGAGCAAGAACGGCATGGCTCT
GGAAACGCAAATCAGTCTGCAAACAAAGATCATATCAATGATTGTCAACCAAAAGACAATACCA
TCAATTGCCAAGGAATTGACACAATAATAGAGATATTCCGTACCTTGAAGTCCTGGGCAATTTC
ACGAACAAGCCTCTGGAAAGGCAATTTCCTGATAAGAAGCTCAGTACTCTTCTGGTACTTTCGA
ATTTCACTGTAAAAATGAATTACAATATGTTAAAAACCCATAAAACGAAACACCCACACTCATA
AGAACAAGAACAATGTTTAGAAAATATGAAAGAATACCGAAGAGCAACAGTTCCAGGACGGTAG
CGATGAGGCTTCTTCACACCACCGGTGGTTGGGGCAGATTTACGGGCAGC
						
					

			
		

Sequences
Splice junction sequence	GTTTAGAAAATATGAAAGAATACCGAAGAGCAACAGTTCCAGGACGGTAGCGATGAGGCTTCTT CACACCACCGGTGGTTGGGGCAGATTTACGGGCAGCccttggtagcaagttgcttccttggagc cttcccaccagtcgacttacgggctgtctgcttggtacgggccatctctgcaaagatatgaata atttcaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTTGGTAGCAAGTTGCTTCCTTGGAGCCTTCCCACCAGTCGACTTACGGGCTGTCTGCTTGGT ACGGGCCATCTCTGCAAAGATATGAATAATTTCAGAAGACAATTAAAAAATATAAAACTAGTTA CATTTTCTCATTAACTACCAAACATAACACGGAAAAGCCAGATCTTAGATAATTACTGTATAAT TCCCAAAAGCCCTAATCTTCAAACTAGAAAACTTCTAAGCCAAAAAAGAAAATCAGAATAGGAT TTAAAACAGAAGTCGAAGGTCCTAAATGAACTCAGAACAGAATCAGAGTGCCCTAATTATAAAT AAATTCAACCTTACCTCCCCTATTTCCCTAATTCAACTTAAACTACATGAAATACAAAAACAAA TTAAAAGAATCAGAATTTACAAACCCTAATTTACTATAAAAATAAACAAATAAATAAGAGCCAA GAGAGCGAGGGAAGGTTACTAACTCAAAAATCTGAGACAAACGCTTATTTATCTTCTGGTTCAA ATGTTCGAAAAGGATAGCAATTAAGAGGTATTTATAGAAGGTTGGGGGGTTTGTTAATGAAGTT GATCCGACGGTTCGGATATACTATCCGTGTGTTTCTTTTGTACGAGATCTGACGGTAAAAACTG TCACAAGTTGTGTTTTCTGAGAGGAAAAGGACGGTTGGGATTAGATTATAGAGGGAAGACACGG ATCGTGATGGTTTGATTGCTTGATTCTTATTGGTCGACTAAAATTGCTTTTTAGCACAAATGTT TTTAAGGTTGGATTTACCACAGAAACTTGGATTAATTTAATGTTCAATATAGAAGAATTTGAGT TCAAGTATCCTGAAGTGTATTATCTTTATATTTATGGGATGGGAGGGGTTTTAGATAGTTTTAA ATATTGTGTAAAAAAAACAGATATGATCATAATTTATAATGAGATTATTAAAAAATATACATAG CAAGTTTGATTTGGATTAACATTTACTTATAAATAGGTGAATGCATGGGTTAAATTATGAAAGT TGTTGTAATTTGGTATTAGTCCTTAATAGATTTAAGAAAGAATTTTGAGTAGTTTGAACTTAGA TTTTATTATAATTTTGATAGTAAAATTATAAGATTATTTAAATTTATAAAAATCATAATTTTTT TTGGCAAAAGGGATTAAAAAACTCTTAATGAAAATTAATAAATCAATTTACATCTTAAAAAAAA TATATGCACAGAATTGAAGTCCCAAAAGCAAAATTAAAAAAAATAAAAAATAAAACTCTTTCAT TACCAATAATTTTTGTTTAAAAGAGGGGAGAAATAGACATCAAAGCTCCTTTTGATGTAACATA TAAATTTGTTTCGCTTCATTCCAAACACAATTCAAATATATATTAACAAAAATGGTAAAAAATT ATAATAATTAATAGTAAAAATAAAATTTAAAAATTATTTTTAAAAAAGAGTAAGAAGTGTTTTG AAGAAAATTTTTATTTGTCCTTAATAACATGTGATATTTTGGCTTATAATTGACTATTTTGACA AATCTTTTCATAGTTAACAATATTTATGATCTTTAATCATTTTTAACATTCTTTATAATTTTAT ACAAGATTTTAAATATATTACAATATTTTCAATTAGGTCAAATAAATATAAACAGATAAATAAT CAACTTGAGCCTTGATTTTTGGGCAAATTTTTTTTCTTAAGATATTAACTAATTAATTATATAG AAATACTCGGAAAAGAAAAACATCCTCTATCTTGTCTAATTTTAGAAAGGTTAGAAACGACATA GGAAGGGTATCAAAAATCTACAAATCCTTTTTCTAATTAAAATTAGTTTGACTAAATAGTCTGT AGCTTGATTTACTCTCTAGGAATATAAAGCAAGAACCACCGTTTTTCTTGTGCCAAAATATTTT GTATATATCTAATCAAAGTTGAATTTGACGTGCTAGACTATAGGAACGCTTCCTTAATTAGTTT TAACAACCTCCAAACTATAAGATTTGATTATTCCATTATCAAAGGCCTTTACATTAGGTTAGCT TGAGACTATCCAAAATATCCTAAAGTTCGGCATCAATGACTGAACACTTTTCTAAATAACAGTT ATAGCCAAGACACCCATTCCCATTCTCATCACAAATTACTCCCCCGAAAACTACATTACCTAAT TAATTTCCTTCCAAGGCTCATTGGGCCAAATTTGTTTTTAGAAATAATGACCTATTCACGTTAC AATTTAATAAAAAAATTTTAATTAACCATTTAATTACTCGTTTCTTTAATTTTAGAAGTTAAGT TTTTTTATCAAAACATCTTAAAATGACTGAAATTTTTAACACTCTGAATCTCAACATTTGAAAT TAATTAATTTTTAATATTTTTAATATTGTTTATTTTACAATTTTTTAAATAATTCTAAGAATTT TCAATATTTTAAAAAATAACTAATTGTTGATGTTATAGTTTCAACTTTAATTTTCGAATAATTT GAAAAAAGATACAAATATAAATATTTAAAAATAAAAAAATTAATTTGAAAGCTAAAATGATTTT TTTTCCAAAGTTGGCCTAAATAAGTAATTATACATTTTTTCTAATATCTCAAATTATTAAATAA GAAGTATCTTAGGTAAATATAGAATCAACTTCAAAATCTTGGAACCAAAAATTTCACCTTAAAT GCCACTTGTAAGCACAAAACATCTTGAGCCTCTTAACAAAAGCACCAATATCATTTCTTTATTT TACGCTGACCACAGTAATAAGATACGCTGAAAATCACGCATCCCACTTTTCCCAAGGACACATT TTCATTACCGACCTGGTTCAATCGCTCTTTCCGGCAGGTTTACAAATTTAAGCCCATAAATTTA AACATGCCCCCTCCAAAATATTCTCTTCACGGGCTGATTCCACAACACGACTAAACAAGATTTG CTTTACAATATATGAATAAATATTCGAAGTCACTAGTTTTGATCAGGAAGCACATTTAAACAAA CTATACCAGACATGAGTGTTCTTAACCATTAAAATATCAGACATCACACTCTCCACCATAACCC CATTTCATCATAACATTGAACCTCAGCACTAAGATAAACCTATCTTTTAATATTGGCCTAAAAG AGGAATAAAATTAAACATAAAAAAAAAATAGTACAATACATCTGCCTAACAACAAACAACAGTT TCTCCATTCTAAGTTAAGTGATCAACACACTTGGAAATTAAGCACGCTCGCCCCTGATCCTACG AGCCAACTGGATGTCCTTGGGCATTATAGTAACACGCTTGGCGTGGATCGCACACAGGTTGGTG TCTTCAAAGAGACCCACAAGGTATGCTTCTGCAGCTTCCTGAAGAGCAAGAACGGCATGGCTCT GGAAACGCAAATCAGTCTGCAAACAAAGATCATATCAATGATTGTCAACCAAAAGACAATACCA TCAATTGCCAAGGAATTGACACAATAATAGAGATATTCCGTACCTTGAAGTCCTGGGCAATTTC ACGAACAAGCCTCTGGAAAGGCAATTTCCTGATAAGAAGCTCAGTACTCTTCTGGTACTTTCGA ATTTCACTGTAAAAATGAATTACAATATGTTAAAAACCCATAAAACGAAACACCCACACTCATA AGAACAAGAACAATGTTTAGAAAATATGAAAGAATACCGAAGAGCAACAGTTCCAGGACGGTAG CGATGAGGCTTCTTCACACCACCGGTGGTTGGGGCAGATTTACGGGCAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							gra_circ_000238 ghi_circ_000257 						
					
						PMCS

Conservation Information
Conserved circRNAs	gra_circ_000238 ghi_circ_000257
PMCS

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Salih et al., 2020

circRNA

Detail information of A02_circ_ag.5

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