Plant Circular RNA Database

Detail information of AT5G12150_circ_g.16

			
						 General Information
					
						CircRNA Name
						AT5G12150_circ_g.16
					
						ID in PlantcircBase
						ath_circ_037750
					
						Alias
						5:3928323-3929611
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 3928323-3929611  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G12150						
					
						Parent gene annotation
						
							Rho GTPase-activating protein 6
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G12150_circ_g.4 AT5G12150_circ_g.5 AT5G12150_circ_g.6 AT5G12150_circ_g.7 AT5G12150_circ_g.8 AT5G12150_circ_g.9 AT5G12150_circ_g.10 AT5G12150_circ_g.11 AT5G12150_circ_g.12 AT5G12150_circ_g.13 AT5G12150_circ_g.14 AT5G12150_circ_g.15 AT5G12150_circ_g.17 AT5G12150_circ_g.18 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G12150.1:6
AT5G12150.2:6

General Information
CircRNA Name	AT5G12150_circ_g.16
ID in PlantcircBase	ath_circ_037750
Alias	5:3928323-3929611
Organism	Arabidpsis thaliana
Position	chr5: 3928323-3929611 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G12150
Parent gene annotation	Rho GTPase-activating protein 6
Parent gene strand	-
Alternative splicing	AT5G12150_circ_g.4 AT5G12150_circ_g.5 AT5G12150_circ_g.6 AT5G12150_circ_g.7 AT5G12150_circ_g.8 AT5G12150_circ_g.9 AT5G12150_circ_g.10 AT5G12150_circ_g.11 AT5G12150_circ_g.12 AT5G12150_circ_g.13 AT5G12150_circ_g.14 AT5G12150_circ_g.15 AT5G12150_circ_g.17 AT5G12150_circ_g.18
Support reads	2
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G12150.1:6 AT5G12150.2:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							ATCAAAGGATCACAAACACTTACTGGATCATTTTTGAAAAAGACCAAAGAAGTTCGGGTAAGGA
TAAACCAACGCTTCTTCCAGGATGTCCAACCTAGTCcttgttcgtattcttgaactctgcgttc
tacctcctcaacatctgcagactgtcttaaaattccttctactttggttcctgtgtcaacaaag
aggtgcac

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CTTGTTCGTATTCTTGAACTCTGCGTTCTACCTCCTCAACATCTGCAGACTGTCTTAAAATTCC
TTCTACTTTGGTTCCTGTGTCAACAAAGAGGTGCACAATCAAAACGAAAACATTTCTATGGGAA
ATTAGAAACAATCACCACTTCTATAATAGCCTATATGATGAGTTATAAAAGGAATTAAAAAGTA
TATACGGCACTGAAGATAATATAAAAAAATCATTTTTCTAGAGGACAAACAACAGACAATAATG
ATATCAGATGGTGAACATATAATGGGAGGAACGTAATTAAACTATGAGGCCAATACTCACCATA
TGTCTCAAGAAATTGAAGTGCTTTCTCAAGAAAAGATGGACTTCCATCGATTTCTTCTAAAGCT
AGCAAAATTGGTCTTCCAACAACCGAAGACTTCAACGGGCGCTGATCCCTCCCTGCATGTCAGG
GTGTTACTGATATACATCAGAAATATGAAAGGAGCCATAGCAGAGGAGCTGATAATAATAAAAT
AAGTGAGAACTAACATGAATTGAAAGATGCTTCAATAGTATTGTTTGCTTCTGTTCGGAATATT
CCATTTTGACCAATTACAAGTGCTGCATTGGGAGCTTGTGCAAGGGCTTGCTCAAGGGCAGCCT
TCCATTCATACAAGTCGTCCAATGTCTCAGCCTATGAGAGCCAAATAATTAGCATTCGATAGAA
GCATAACATAGCACATATCGAAAAAGGGGGAAGAAAAATTAAGTTAGCCAAGCAAATATATAAA
TCACCTTAAGGGTGAAGGCTCGTCCATCACGCCCATCTGGGAATAGTACAGTCAGCAACTTCTT
ATCTTCTCTCACCACGACACTGCAAACAAGGATGTTAACGCAGGCTAGAAAGTTGGAGCTATTC
TTATAAACAAAAACCACATGAAATTTCTACCTCCCCGAACTGTTCAAGTCAATGCCTCCAAGGG
TCAAATTTACTTCACCTCCCTTTTGTGGTAATGCACTCTGTCAAACAGTTGAAACAATGAGTTT
AAGTTATAAAATAGTTCTAGAAAGTTTGGAGTTGATAATGTAAATCAACATCCTCCTAAAGCTT
TTAGCAAATTAATACAACCATCTAAGATTTCTATTGATCAACTATCCTAAGTTCCAAAAGCTCA
ACAGTAAAAGTATTATATGAATTGGAGAAAAAATCACATCAAAGGATCACAAACACTTACTGGA
TCATTTTTGAAAAAGACCAAAGAAGTTCGGGTAAGGATAAACCAACGCTTCTTCCAGGATGTCC
AACCTAGTC

Sequences
Splice junction sequence	ATCAAAGGATCACAAACACTTACTGGATCATTTTTGAAAAAGACCAAAGAAGTTCGGGTAAGGA TAAACCAACGCTTCTTCCAGGATGTCCAACCTAGTCcttgttcgtattcttgaactctgcgttc tacctcctcaacatctgcagactgtcttaaaattccttctactttggttcctgtgtcaacaaag aggtgcac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGTTCGTATTCTTGAACTCTGCGTTCTACCTCCTCAACATCTGCAGACTGTCTTAAAATTCC TTCTACTTTGGTTCCTGTGTCAACAAAGAGGTGCACAATCAAAACGAAAACATTTCTATGGGAA ATTAGAAACAATCACCACTTCTATAATAGCCTATATGATGAGTTATAAAAGGAATTAAAAAGTA TATACGGCACTGAAGATAATATAAAAAAATCATTTTTCTAGAGGACAAACAACAGACAATAATG ATATCAGATGGTGAACATATAATGGGAGGAACGTAATTAAACTATGAGGCCAATACTCACCATA TGTCTCAAGAAATTGAAGTGCTTTCTCAAGAAAAGATGGACTTCCATCGATTTCTTCTAAAGCT AGCAAAATTGGTCTTCCAACAACCGAAGACTTCAACGGGCGCTGATCCCTCCCTGCATGTCAGG GTGTTACTGATATACATCAGAAATATGAAAGGAGCCATAGCAGAGGAGCTGATAATAATAAAAT AAGTGAGAACTAACATGAATTGAAAGATGCTTCAATAGTATTGTTTGCTTCTGTTCGGAATATT CCATTTTGACCAATTACAAGTGCTGCATTGGGAGCTTGTGCAAGGGCTTGCTCAAGGGCAGCCT TCCATTCATACAAGTCGTCCAATGTCTCAGCCTATGAGAGCCAAATAATTAGCATTCGATAGAA GCATAACATAGCACATATCGAAAAAGGGGGAAGAAAAATTAAGTTAGCCAAGCAAATATATAAA TCACCTTAAGGGTGAAGGCTCGTCCATCACGCCCATCTGGGAATAGTACAGTCAGCAACTTCTT ATCTTCTCTCACCACGACACTGCAAACAAGGATGTTAACGCAGGCTAGAAAGTTGGAGCTATTC TTATAAACAAAAACCACATGAAATTTCTACCTCCCCGAACTGTTCAAGTCAATGCCTCCAAGGG TCAAATTTACTTCACCTCCCTTTTGTGGTAATGCACTCTGTCAAACAGTTGAAACAATGAGTTT AAGTTATAAAATAGTTCTAGAAAGTTTGGAGTTGATAATGTAAATCAACATCCTCCTAAAGCTT TTAGCAAATTAATACAACCATCTAAGATTTCTATTGATCAACTATCCTAAGTTCCAAAAGCTCA ACAGTAAAAGTATTATATGAATTGGAGAAAAAATCACATCAAAGGATCACAAACACTTACTGGA TCATTTTTGAAAAAGACCAAAGAAGTTCGGGTAAGGATAAACCAACGCTTCTTCCAGGATGTCC AACCTAGTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.15012787

Conservation Information
Conserved circRNAs	NA
PMCS	0.15012787

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G12150_circ_g.16

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