Detail information of 4_circ_ag.5


General Information
CircRNA Name 4_circ_ag.5
ID in PlantcircBase ath_circ_032434
Alias NA
Organism Arabidpsis thaliana
Position chr4: 12458091-12462717  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.6 4_circ_ag.7 AT4G24000_circ_g.1 4_circ_ag.2
Support reads 2
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGCCCTTTTGCAAGAATAACAATGTTCAAGATCGCTCTCCTGAAGTTTATTTTTCTTCAAAG
TCACATTCTTCGAGTGATGAAGCTGAAAATCTTAAGatgatgtacgaagacatgaagagtagag
tagaacatgtggtggagagtggaaaagttgagactgcatttatcacatgcgatcaatttcgtgg
ggtattcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGATGTACGAAGACATGAAGAGTAGAGTAGAACATGTGGTGGAGAGTGGAAAAGTTGAGACTG
CATTTATCACATGCGATCAATTTCGTGGGGTATTCGATTTGTGGACCGACAAATTCACTCGTCA
TGACCATCCCACAATTATTCAGGTAATTTAAAGAAAAAAAAAGTTCAAATATTGTTTTCTCACT
ACTATATATCATAAGAAAATTGCATTTTGAATATATTTACTAGACAATTATACCTTGCCATATG
TTAATTCTTTTGTCTTGACAAAATCTCAACTAACATTTATTTAAGGACAGGTGCTACAAAATAG
TGAGAATGATATGGACGATACCAAAAAATATATAATGCCAAACCTAATCTACGTTTCAAGAGAG
AAGAGTAAAGTTTCATCACATCATTTCAAAGCCGGTGCTCTTAATACCTTGGTATCAACTAAAA
AACCTATCTATAATTAGTTTTTGGTTTCGTTTAATTTTAGTTAATTCCGTATTTTCTTTTTATT
ATAGCTACGAGTGTCTGGAGTGATGACGAATTCACCGATCATTCTAACACTAGACTGTGATATG
TATTCCAACGATCCAGCAACACCAGTTCGTGCCCTGTGCTATTTAACAGACCCTAAAATCAAAA
CTGGTTTAGGGTTTGTGCAGTTTCCTCAAACATTTCAAGGAATAAGCAAGAACGATATATATGC
ATGCGCGTATAAGCGTCTCTTTGAGATCAATATGATTGGGTTTGATGGTTTAATGGGCCCGAAT
CATGTGGGAACTGGTTGTTTCTTCAATCGACGAGGTTTTTATGGAGCTCCATCTAATTTAATTT
TGCCTGAGATAGATGAACTTAAGCCCAATCGTATTGTAGATAAGCCTATCAATGCTCAAGATGT
TTTAGCATTGGCTCACCGTGTAGCAGGATGTATCTACGAGCTTAACACCAATTGGGGATCAAAG
GTAAGATATAACCAACCCTAGCTCGTACCTTTATCTAGTATTGATTTCCATTTGTTATATTTTT
TCATGAAAACTATATCTAAAGGAAAATGGACCTAACTAATATATATAAGTGACATACACAAATC
CACTAACGATAGGGTTTTTTTTTGGTAAAACACTAACGATAGGTTATCGATAGAAAATCCATAA
AAGTTAATATGGTACCAGTGATATAGAAGTGACATGATCTAGATCCGCTCATTTTTAATTGATT
TTGAGTTGAAAGTTTATGAACCTCAAAACCAAACAAGTTTCATTCTAGGTTAACTTATTAGAAT
TAGTTTTTTTTTGTTCGTTCCATGTAAGTGAACTAAGAACAATTAGTTTCTCTAATCTTAGATA
ATTATAGCTAATTTTTAGAAACAAACTTGATTTCTTGATTGATACGAAACATAGAAAATATCTT
CTTTCATAATTGATAGTCTAAAGTAAGATCATTGGTTGTAAATCATAATATATTTGTTTCCTAG
TTTGTTATACCGTATAACTTCATTTTATCATTCAAAACTATGCAGATTGGATTCAGATATGGGT
CTTTAGTAGAAGACTACTACACAGGGTATAGGCTCCATTGTGAAGGATGGAGATCAGTTTTTTG
CAGACCCAAAAGAGCAGCATTTTGCGGAGATTCCCCAAAAAGTCTAATTGATGTAGTGAGCCAA
CAAAAGAGATGGGCCATTGGGCTTCTTGAAGTTGCCATCTCAAGGTATAGCCCCATTACCTATG
GTGTCAAATCAATGGGTCTAGTAACGGGAGTAGGCTATTGTCAATACGCATGTTGGGCCTTTTG
GTCACTTCCTCTTATCGTCTATGGATTCTTGCCCCAACTTGCTCTCCTTTATCAATCTAGCGTC
TTTCCCAAGTCATCAGATCCATGGTTTTGGCTTTACATCGTTTTGTTCCTCGGTGCATATGGGC
AAGATCTACTCGACTTTGTATTAGAAGGAGGAACTTATGGCGGATGGTGGAACGATCAAAGAAT
GTGGTCGATAAGAGGATTCTCTTCACACCTATTTGGCTTCATAGAGTTCACTCTTAAAACCCTA
AACCTCTCCACGCATGGATTCAACGTCACAAGCAAAGCCAACGATGACGAAGAACAAAGCAAGA
GGTATGAGAAAGAGATTTTTGAGTTCGGCCCCTCTTCGTCCATGTTCTTGCCCTTGACTACGGT
TGCCATCGTTAACCTCCTTGCTTTTGTCTGGGGGCTTTATGGTCTTTTCGCTTGGGGAGAAGGA
CTCGTCCTTGAGCTGATGCTGGCGAGTTTCGCGGTGGTGAACTGCTTGCCGATCTATGAGGCTA
TGGTGTTGAGGATAGACGATGGAAAATTACCAAAAAGGGTTTGTTTCGTAGCTGGAATCCTCAC
ATTTGTGCTGATTGTGTCAGGTTACGTCTTCCTCAAGTAACTGGACCCATTATGGTTGGTTCTG
TCGTTTCAGTTAAACTAATATTACATCTGTATTGTGGTAATTAGGAGAGAATAATGTGATGAAT
CCATTTCTCACCTCATTTTAGAACATACATTTCGGTATATTGCGTCTGTATTGTAGTAATTAGG
AGAGAATAATGTGTTGAATCCATTTCTCACCTCATTTTAGAACATACATTTCGGTTTATTGTAT
AAGCTTAAATTAGTAATTGAAAACGACATACACTATCTATTGATATTTTCACTGATTAATACGA
CTGTATTTTTTATATTTCTTAATGGATGTTTTGAGCACAATTTAGTAAATATGGGCCGTAGAGA
TATGCTACTTCGTCAAAATGTTAAAACGTCTTTGAGATATTTTGAGATATAATAGACGATAAGA
CAACATTTATCTTGCTTACTTCGATCTATTGTATTTATTTGTATTTATAATTGAAGTTTCACCG
TACAAATACTTTATATTTATCTTAGGTTTATAACAAATTAATTATTCCCTAAAGTTTTAAAATA
AAATATTTCCCTAGCGAGCTAGTGGGATATTAATTATCATACTCAAAGTAGTCGATTATAGAAA
CTAAATGATTAAAATTTTACGTAGTCTGGCTCTGTTTTTATCTCAAATTTCTTTGCAAATAAAA
ACACAATAAATCATATTTACTTGGGAGAAACTTCTATCACATATTAATATTTATCAAGAAAACT
TCAATCATATTTTTCGTAAAGTGTTACTTACCTTTATACAAATATTCCGTGTATTCCTCGGTTT
ACGATTCTTTATGTCTGATTGTGTGGAAAAGTACAATCGATATTTTTGCAAGAAGTTAAGAAGT
TGGCACTTGGCAGATGCGTGACGTGAATGAATCGTCAAGGCAGTGACTCTCCAAGCCCCAGTCT
TCATCCATTTGACATTTTCGCATCTTTTTCAAGCTAGAGAATTTTAACTTAAGTTCTCCATTGA
AAATTTCAAACTATATAAATAAAACTCCACATATCTCACTAAAATCTAACACGTGACAAAAATT
TAATTACTTAAGTGTAGTATATGTTAGTAATTTTCTCAACTCGCGAGCAAACTTCAGTTAACTT
GATTTTGATAAAATAAATAACACATCAATTATCTGAATTCTTTTTAAAAGAAACAAATATTTCA
TAGAATTAGTTTTTTTTTCATTTTAGAATTCTAATTGAATATTACAGAATAAAAACTTTTACTT
ACTACCACACAATAATAGACTTTAAAGTTAGTTATTGTAAGTAGAATGTATTATTTTGAAGTTA
AAATCGTGTATTTATCGTGATGTAAAAATTTACCGTTCTTTCTTATAAACTAGTCAGGCTATTC
TGGTGTTGAACTACTTCACTTCACACGTGTCTTTTGGAGAAGTAGTTTCATTAATAAACACTTA
TCTTTAATTTTGGCTTCAACTTTTCAAAGGCACATAATGATCACACTGTACTGTATCATCTTAT
CTCATAAATGAGAAACTCGACCATAAGAACTGTCTATAGTGTGTATATTCAGAAAAGTTATCAA
TAGTTCAATACTAAGAAACCGGCCTATATATATATATTTGTGGTCACTAATTTCTCCAAAAACC
AGTTGCCTTCCGTAAAAAGATGGAACCTCAGAGAAAACACTCGACAGCCCTCCACACGTGTCAT
CCCTGCCGGCGAACCATTCCATACAGAATCTACGCCGTATTTCACACGTGTGGCATCATAGCTC
TCATGTATCACCATGTACACTCAATTGTCAACGCAAACAACACTCTAATAACATGTCTTCTTCT
CCTCTCCGATATTGTTCTCGCCTTCATGTGGGCAACCACAACTTCCCTCCGGTTAAACCCGATT
CATCGGACCGAGTACCCTGAAAAATATGCTGCTAAACCGGAGGACTTTCCAAAGCTGGACGTTT
TTATATGCACGGCTGATCCGTACAAGGAGCCTCCGATGATGGTGGTTAACACCGCTTTATCGGT
GATGGCTTACGAGTATCCGTCTCATAAGATCTCAGTGTACGTATCGGACGATGGAGGATCTTCC
TTGACTTTGTTTGCTCTTATGGAGGCTGCCAAGTTCTCTAAGCATTGGTTGCCCTTTTGCAAGA
ATAACAATGTTCAAGATCGCTCTCCTGAAGTTTATTTTTCTTCAAAGTCACATTCTTCGAGTGA
TGAAGCTGAAAATCTTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.456078294
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017