Detail information of Chr3_circ_ig.139


General Information
CircRNA Name Chr3_circ_ig.139
ID in PlantcircBase csa_circ_002140
Alias Chr3:35562715_35567265
Organism Cucumis sativus
Position chrChr3: 35562715-35567265  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Chr3_circ_ig.140 Chr3_circ_ig.141
Support reads NA
Tissues leaf,root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTTGGATGGTCTGACGTCTCACAACCAAATCGAAGCAAGAAGAAGCCATACTCGTACACTCT
CACAATGAAACAACAATTCAGTTTTGAATAGAAAAGtggttttgcagttagccgcgtggagcaa
ctccagccaattgttccatcgctttctttctctcaccaaggtatcatctctttcttcattctcg
attactta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTTTTGCAGTTAGCCGCGTGGAGCAACTCCAGCCAATTGTTCCATCGCTTTCTTTCTCTCAC
CAAGGTATCATCTCTTTCTTCATTCTCGATTACTTATTTCCTGATTTCATTGACGGAATCAAGT
GATCAAATAACAGTTTAAAATATAAATAGTTGTGTTGTAAATATTTGAATTATGAATTGGGAAT
AGAATTATGTATTTCAGCCGAGAGAGAATCTACAGTATGAAGTTAATTCCGCAAAATGAGAAAA
TATCAGAAGATTGATGAATTTTAGCGCGAATGTTGGATTACTAATTTGCCCTTCCTTGTAGTCG
GTAGAGGATCATCGTCACAACCACCGCATGACGTTGGGGCTTGTCGACATATCTAAACACAAAT
TCATTTTCTCACGCTCCTTGACCTCCTCATGTTCTCAAAAGCCTTCACGTTTAGTAAAAACATT
CAGGACTTGGCTTCTGAAATGTTCCCAGGCCAAGTTGAAGCTGCTTTGAAAGAGCCTCCTGGTA
ACAAAACGGCGCCGGATAGAGTTATCGTCGCTGTCAAGGCTGAGAGAGTGATTTCCAAATCTGC
ACTGGCTTGGGCTCTAACTCATGTCGTCCGTCCTGGTGACTGTATAACACTACTTGCCGTCTTC
TCTGTCGAGAAAACTGGTAATTCAGCCAATTCTTTCCAAATTGTTCTGATATGGGTTCATTACA
CAACTGTCAAGTCAGATTGAATTATGGTTGATTAAGGCATGTTTGAATATGTGTGTGTTCAGGC
AGAAGATTCTGGAATTTTCACAGATGGAGCGGGGATTGTGCGAGTGCTGTCCAAGAGAATCTGC
CGGATCGAGTACACGAGATCTCCGAGTCTTGTTCTCAGATGGTGCTTCATTTCCACAATCAAGT
TGAGGTACAATTTTCTTTTTCTTTTTTCTTTCACTATGATGGGTTTCTTGTGCCATTGACCCTT
TAAACGTCGTCGTTTCAAATTCATTTTTTATGGACCACGCTGTCACTTCTTAGCTAGTTGTCAT
TGTCTGGTTGGCGGACAAAAAAGTGAAACTTTTCTGATTTACCTTGTTGCTGGATGATTGTGCT
ATTGAGTTTAGAAGATTCCAGGAGGTGGAAGGGAGTCTGCATTTGTTTTAAGAGAAAATACTAA
TTAGGTTGATGATTGAAGGACCAGGTTGGAATACATGTGTATTTGGGACCATTGGAACCCTTGA
AAAAGACGGTGGGAAAAAGGTTTCTTTTACCTTTTCCCCCCTTTCTCCCATTTCCTTCCACCTT
CTTCAATGGGGTTAAATTTTGTAACATGGACCAAAGCCTAAACCAAGCTAATATGTTGATGGTT
CCCCATGTTTCAGAGTTTTAAATTTATAGAGTTTGGTAATATCACTGAGCTTTGGATATGTGTA
ATTGAAGGAATGAGGATGTCGATTACAACATTGTGTGGTGTAGGATGATCATTTTGATGAATTA
TGATGAATGCTAATAAGAAGACCTATCATCTATCAGCTTTTCATAATTAAACTAAGCATGAGTG
ATAATTGGCCACTAAAATAAGTGATCGTGGTAAACCCAATTATGTCCCATTGGTTTTCAGGTTC
AAGTGAGGATTAAAGTGGTCACGGGAACACAAGGAGGATCTGTCGCTTCTGAAGCAAAGTTAAA
AGGAGTTAACTGGGTCATACTAGACAGGTAATTTTCCTCCAGAATGTACTAGCTTTTTATGTTT
CTTAGGCTTCTGATCTTGTCCCGCGAATAGACCATTTGATTAACATAATTATTTAGAACTTCAT
TACAAACTGGGTAAATCATAAGTTACCTCTGGTAGCTTGTTCTGCAGCTTTTATAAACATCGTT
AATTAAGAATAAGTGGTTGTGCGAGATTTGTATTCATAGATTGTGGTTCAGTGGTAAATATTAT
ACCCAGTAAACCAATACTTATGGACCTTATCCAAAGTAATTAATTTATTATGTGGATCCTTTTG
TATTTTAATTCGAGTTTGATTGTTTGATATCTCTTTTAACAAAATGCTACTTAATTATTATTGA
TTGTGATTCTTTTTCCTCTTTTCCTTTTTCTTGTTGAACATTAAGACCTATGCTTCCTCTTTTA
ACTTTTGTTTGGCTCTATTTCTTTTATGACATACTAATAAAAAAGTTTCAAGATCTAATGCCAT
AGCTAATTGTTGACCAGGAAATTGAAGAACGAGGTAAAGAGTTGCCTGGAAGAACTTAGCTGCA
ATATTGTTACTATGAAAGGATCTCAACCGAAAGTTCTGAGACTTAACTTGGAGTGCTGGAGTGA
ACCTCAAACTCCCTTTTTTTCAGCTAATTCTTCTCCTGTTCGAAAAGTTCAACAAAATAGGATG
AAGCAGACAACTCCATTAGCAAGCAGACCAGAAGAAGAACCCGGTGCCTCATTCAGGAAATCCT
CAAAAGAAGTGTCAAAATTGGGTACTGAGGCGGTGTCTTCTATTTTCCTTGTATATGAGCAAAA
CCCGCTATATGAAGGAAACTTGAAAGGAAATCATTTGCCAATTAATGAGACTGACGATTTAAGC
ATGTCATTATCTTCATCCACCCAAATGGAAGAAAAAGTTCTATCTCTACCTCCAACATATGTGG
CCTCAAATCAAAAATGTGTCTATTGGATTTCTCAGAACCATAACATTTCGGAAGGAAAAACTTT
ATCCAAGTCCAAAAGAAGATTCCTTAGATTTGCATCAACTCCGAAGGTGCCATTCAGTAATCCT
ACAAGTCTTGAGAAGAGTACGACTTTTGAAGATATGAGGCTCAACCAATCTGAGAGAAAAGACT
ACATTGTGGACTCAAATATCAGGGATGCTGTCTCCTTAGGCAGAGCATCCTCTGCACCCCCTCC
TCTGTGTTCAATATGTCAACACAAAGCACCAGCTTTCGGAAAACCTCCTAGACAGTTCTCACTC
AAAGAGCTCGAAGAAGCAACCGACAGATTTTCGGATATGAACTTCTTAGCAGAAGGTGGTTTCG
GAATTGTTCATAGAGGAATCTTGAGAGACGGCCAAGTTGTAGCCGTGAAGCAGTTGAAATGTGG
AGGCTTACAAGCAGATGCTGATTTTTCTCGGGAAGTTCGAGTGTTGAGTTGTGCACAACACAGA
AATGTTGTGTTGCTGATTGGATTTTGTATAGAGGACACAATGAGGTTATTGGTTTATGAGTACA
TATGCAATGGTTCGTTGGATTTCCATTTACATGGTATAGTTCAATGCTTCTTCCTTGATATTTC
TTCGACTAATATAATTGGGTTGTTTCATCTGCTTAATATTTTTTAGTTCACCATGACGACATGC
TAGCTGTATCTCTAAATTATAATATTTCAATCATGGAGTTTCTAAGCTTCAGTCATTGGTAGGG
AATGGAAGCCAGTTAGATTGGCATTCAAGGCAAAAAATAGCAATAGGAGCAGCGCGGGGTTTGC
GTTATCTTCATGAAGATTGCAGAGTTGGGTGCATAGTGCATAGAGACATGAGACCTCACAATAT
CCTCCTAACACATGATTTTGAACCCATGGTACATTGATTCTTGACATCAATCTTGTTCATTTTT
TAAGCATTTATTTTCTTTCCCAGGACATCCATTCTTTTAGATGATAGTTCAGACCCATTCTAAA
ATGATCTTCTCACTTTATTAATTATCCCATCAGGTTGCTGATTTCGGACTGGCGAGATGGCATT
CTAAATGGTCTACCAGTGTTGAGGAGCAAGTCATTGGAACTTCCGGGTATTCACTCTACATCTT
GTTATATGACAAGCTATCTGTTTATATGCAAAGCTATAACTTGCAAAGATTACGTAGTTGCTTT
TCTTAAGTTTTAAATTATTAAAAGTTAAGTCTGTTTTGTTCACTCACACAATAATAAAATAAAA
TACAAAAATAATGATCAAACGCTAAAGATTTTCTTATTACTAGATTCATCTAGTTACTTCTGAT
ACCCCAGGTATCTAGCACCAGAGTACATCAATGGCGGTATGGTATCACATAAAGTGGACGTTTA
TGCATTTGGCATGGTTTTATTAGAGTTGATTAGTGGCAAAAGAAGCTGTGAGCTTCACCGTCTA
GAGGGAAAACAATTCATATCAGACTGGTTCCACCCCATCTCTGCCTTGCAAATTCAACATTTAC
TAGCTAGTAGTAATCATTTAATAGATCCATGCATGGCATCTGAGCAATCCCCCGACTTCTATTA
TCAACTGCATTCTATGGTTCGTGCCGCTTCCTTGTGTCTATGTCCAGATCCTGAATCAAGACCC
TCAATGTCAAAGGTTGGTTTTAAATTACCAACTTTTGTTAAACGTTTATTGTGGTAGCTATTTG
ATACATCTAAGTTGTTTACAGATTCTTCGAGTACTCGAAGGAGGAGATCCAGTTGTTCCTCTTG
GTTTAGACTTCGACCCAGTCGGCTGCAGAAGTGCACACTTGGATGGTCTGACGTCTCACAACCA
AATCGAAGCAAGAAGAAGCCATACTCGTACACTCTCACAATGAAACAACAATTCAGTTTTGAAT
AGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.101868075
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019