Detail information of Zm00001d027874_circ_g.2


General Information
CircRNA Name Zm00001d027874_circ_g.2
ID in PlantcircBase zma_circ_000547
Alias circ110
Organism Zea mays
Position chr1: 16039962-16040909  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d027874
Parent gene annotation nuclear transcription factor y subunit a1
Parent gene strand -
Alternative splicing Zm00001d027874_circ_g.1
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d027874_T010:3
Zm00001d027874_T008:3
Zm00001d027874_T001:4
Zm00001d027874_T004:3
Zm00001d027874_T002:4
Zm00001d027874_T003:3
Zm00001d027874_T005:3
Zm00001d027874_T011:4
Zm00001d027874_T007:3
Zm00001d027874_T006:4
Zm00001d027874_T009:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGAGAGAGAGAGAGAAACAGATTGAGCAATGTCTTGGGGATTATCCTTACGTACGTCTCATC
TCACGGAAATTCTTTACTCTTGTTTTTCAGTTCGTAcgatagcatgcgggccataagctgctgc
caccgcgccaccgtagtatggatcggcatatgggtatgatatggcctgaaaaggtgcgtactgc
gtaattca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGATAGCATGCGGGCCATAAGCTGCTGCCACCGCGCCACCGTAGTATGGATCGGCATATGGGTA
TGATATGGCCTGAAAAGGTGCGTACTGCGTAATTCACACGACTGCCCCCATTGGAGAACAAGTA
AACAGCTGCAACTAGAAGAAAGAAGAAAAAAACCTAGCAGTAGTAGAGACTTAATAAAGGCTTC
AAGTGCAGAAGGCATTTGGAAACTTACGAAGGACTGAGTACGGTCAGGCTTCGGATTATGTGCG
TAAGCTGTTTCCGGATTGCCCAGGGATAACGCTGACATCATCTTGTTTTCGTCACTCTTCGAGT
ACCCATCAAGGTTGCCTAGTAGAAGTAATGATACAAGGAGAAAAGAGTGTCACGACGTAGCTTA
ACTTGATTGTACATGCAAGGTTCGAAACCAACAATATGCTATCATCTCTTTTTCCCTTTTTTCT
TTTAACCCACTTTCTGTTTTCACGGCATGATGAATACAGCAGAGAATTGATACGGGGGCAAATC
ACCTGAATGGTCATTATTATGCTCGTTGAGGCTCCCTTCGCTCATTCCAGACGCTTCTTGATGG
CTCGTCTCACTGGTTGACTGGGTAGCCGGGGAGTCGTAATCAGGCATCTGATGGCCAAACTGAA
TCATCACCGCGCCATTCTCTGCACAAGGATCCAGGAGGGCGTTAGAATTCTAGCTGCATGAAAC
TAAACCACTACTACTCTCTCCGTTCTTTCCTTCTTTATTTATCGTGTTTTAGTTTATAAATGAG
CCAGCGGATGACAAATATTCGATAACGGGTGTAGTAGTAAAAGAAATTGAAAGAAAAAGGACAA
ACTGCTCGCCGAAAAGAGAGAGAGAGAGAGAGAAACAGATTGAGCAATGTCTTGGGGATTATCC
TTACGTACGTCTCATCTCACGGAAATTCTTTACTCTTGTTTTTCAGTTCGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.076661436
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b