Detail information of BGIOSGA016179_circ_g.1


General Information
CircRNA Name BGIOSGA016179_circ_g.1
ID in PlantcircBase osi_circ_014266
Alias Chr04:16614291_16614832(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 14375451-14375992  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016179
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GA-GA
Number of exons covered BGIOSGA016179-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATAATTGATAGAATACGATCCGATGACCATGAATGGATCTCTTTCTACTGCAAAGCAATCTT
GTCAATTTGTGGAGTCTAATGCCTTATCTCTGAATTggtatatatatatatctcttgaagattg
atatataacatcgttctcgtggggatttcaatttgttatttccttgtgtactgcctcataatct
aaagatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATATATATATATCTCTTGAAGATTGATATATAACATCGTTCTCGTGGGGATTTCAATTTGT
TATTTCCTTGTGTACTGCCTCATAATCTAAAGATGTTTGGGTTGCTGAATGAAACAAATGTGTC
TTCAATGCATAATTTTATTTCGTGATCTCATATGCTTTTCATAGCATTTAATTATTGAATGATG
TTATGAAACTATTTAATTACAATGAGGTTTAATTTATTTCCATTTCCAATGCATAGGATGTGAA
ATAATTCAGTCCCAAAGTGGTTTCATTAATTCTGTTTATAAGGCATAGTTAAATGTGTAAACCA
AGTTTCATCTAGATGAAACTCATTTATTCTATCTCGACATGTCGTAAGTTTACCCTGTATGACA
TTTCATTTAGTGAGATTAAAACCCTACAACATGACATATCTTCACATTTGTCAGAATATAATAA
TTGATAGAATACGATCCGATGACCATGAATGGATCTCTTTCTACTGCAAAGCAATCTTGTCAAT
TTGTGGAGTCTAATGCCTTATCTCTGAATT
Conservation Information
Conserved circRNAs osa_circ_023504
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021