Detail information of Os04g0616700_circ_g.2


General Information
CircRNA Name Os04g0616700_circ_g.2
ID in PlantcircBase osa_circ_025288
Alias NA
Organism Oryza sativa
Position chr4: 31325396-31325807  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0616700
Parent gene annotation Hypothetical conserved gene. (Os04t0616700-01);Hypothetical cons
erved gene. (Os04t0616700-02);Similar to H0525G02.12 protein. (O
s04t0616700-03);Similar to H0525G02.12 protein. (Os04t0616700-04
)
Parent gene strand -
Alternative splicing Os04g0616300_circ_g.1 Os04g0616300_circ_ag.1 Os04g0616300_circ_ag.2 Os04g0616300_circ_ag.3 Os04g0616300_circ_ag.4 Os04g0616300_circ_ag.5 Os04g0616300_circ_ag.6 Os04g0616300_circ_ag.7 Os04g0616300_circ_ag.8 Os04g0616300_circ_ag.9 Os04g0616300_circ_ag.10 Os04g0616300_circ_igg.1 Os04g0616300_circ_igg.2 Os04g0616300_circ_igg.3 Os04g0616300_circ_ag.4 Os04g0616300_circ_ag.5 Os04g0616300_circ_ag.6 Os04g0616300_circ_ag.7 Os04g0616300_circ_igg.8 Os04g0616300_circ_ag.9 Os04g0616300_circ_ag.10 Os04g0616300_circ_igg.11 Os04g0616300_circ_ag.12 Os04g0616300_circ_igg.13 Os04g0616400_circ_g.1 Os04g0616400_circ_ag.1 Os04g0616400_circ_igg.1 Os04g0616400_circ_ag.2 Os04g0616400_circ_ag.3 Os04g0616400_circ_ag.4 Os04g0616500_circ_ag.1 Os04g0616500_circ_ag.2 Os04g0616500_circ_ag.3 Os04g0616500_circ_igg.1 Os04g0616700_circ_igg.1 Os04g0616700_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0616700-02:3
Os04t0616700-03:3
Os04t0616700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTGACAAATTATTTGTTGAAACACACAATTCCTCAAGTTTGAACAGGCTCCCAAGTTCTGAA
GGAAGGGAACCACTAAAATTGTTTGAGCTGAAACCCaggtctgttaaattccagctcccaatat
aatccggtatttgcccagtaaaattattatccgatgcccacctgaacaagtaaaagatacagga
cataagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGTCTGTTAAATTCCAGCTCCCAATATAATCCGGTATTTGCCCAGTAAAATTATTATCCGATG
CCCACCTGAACAAGTAAAAGATACAGGACATAAGATTTAATTTATGGAATGGAACATTAATGTC
AGCTATACCAAATATTTTGTAAGTTTATACAATATTTTCATTCTTGTAAGCTTGGATAATGATG
ATGGTAGCTCTCCACTTAAGCCAGCACTGTCAATGAACCTGCAATTGAGAGATACAAATAGCAG
AACACATTAGGCTGAATAGTCCAACAAAATAAAATGTCTTCGTAGAAAAAAGAACAAAGTGACA
AATTATTTGTTGAAACACACAATTCCTCAAGTTTGAACAGGCTCCCAAGTTCTGAAGGAAGGGA
ACCACTAAAATTGTTTGAGCTGAAACCC
Conservation Information
Conserved circRNAs NA
PMCS 0.139765595
Functional Information
Coding potential Y
Potential coding position 31325621-31325422(+)
31325566-31325398(-)
Potential amino acid sequence MNNSSSLNRLPSSEGREPLKLFELKPRSVKFQLPI*(+)
MKILWASDNNFTGQIPDYIGSWNLTDLGFSSNNFSGSLPSELGSLFKLEELFIDSAGLSGELPS
SLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLGFSSNNFSGSLPSELGSLFKLEELFIDSAG
LSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLGFSSNNFSGSLPSELGSLFKLEE
LFIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTD(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017