Detail information of AT1G32900_circ_g.2


General Information
CircRNA Name AT1G32900_circ_g.2
ID in PlantcircBase ath_circ_005486
Alias NA
Organism Arabidpsis thaliana
Position chr1: 11921967-11922076  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G32900
Parent gene annotation Granule-bound starch synthase 1, chloroplastic/amyloplastic
Parent gene strand -
Alternative splicing NA
Support reads 23
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G32900.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCATCAAAGGCAAATCTTCCCTGGTAGGCTATGTTGTGAATGCAGAAGACCACccgtccatg
aagtcgaaagaacttttaaagctgatgggcaagttgagaagggaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGTCCATGAAGTCGAAAGAACTTTTAAAGCTGATGGGCAAGTTGAGAAGGGAATAGTCATCAA
AGGCAAATCTTCCCTGGTAGGCTATGTTGTGAATGCAGAAGACCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.169693333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017