Plant Circular RNA Database

Detail information of Os02g0567850_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0567850_circ_g.2
					
						ID in PlantcircBase
						osa_circ_015092
					
						Alias
						Os02circ15951/Os_ciR1348
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 21598024-21599268  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os02g0567850						
					
						Parent gene annotation
						
							Hypothetical gene. (Os02t0567850-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0567850_circ_g.1 Os02g0567900_circ_g.1 Os02g0567900_circ_g.2 						
					
						Support reads
						4/11/8
					
						Tissues
						leaf and panicle/root/shoot, root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0567850-01:1

General Information
CircRNA Name	Os02g0567850_circ_g.2
ID in PlantcircBase	osa_circ_015092
Alias	Os02circ15951/Os_ciR1348
Organism	Oryza sativa
Position	chr2: 21598024-21599268 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os02g0567850
Parent gene annotation	Hypothetical gene. (Os02t0567850-01)
Parent gene strand	-
Alternative splicing	Os02g0567850_circ_g.1 Os02g0567900_circ_g.1 Os02g0567900_circ_g.2
Support reads	4/11/8
Tissues	leaf and panicle/root/shoot, root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0567850-01:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGACCTGATGCAGAAGAAGCACTGCAAGGGTTGAATGGATCAACAATTGGAAAGCAGGCAGTG
CGTCTTTCCTGGGGCCGCAGTCCAGCAAGCAAACAGgtggtcacaattaaagttattcgtaata
gacattctggagtttctgagggttatggttttgttgagttcttttctcatgcatcagcagagaa
agcactcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 213
Transcript exons: 21598024-21598078,21598080-21598190,21599222-21599268
GTGGTCACAATTAAAGTTATTCGTAATAGACATTCTGGAGTTTCTGAGGGTTATGTTTTGTTGA
GTTCTTTTCTCATGCATCAGCAGAGAAAGCACTCCAGAATTTTTCTGGTCATGTAATGCCTAAT
ACCGACCGAGCTTTTAAGTTAAACTGGGCATCATATAGAGCAGGCAGTGCGTCTTTCCTGGGGC
CGCAGTCCAGCAAGCAAACAG
Transcript length: 267
Transcript exons: 21598024-21598207,21599186-21599268
GTGGTCACAATTAAAGTTATTCGTAATAGACATTCTGGAGTTTCTGAGGGTTATGGTTTTGTTG
AGTTCTTTTCTCATGCATCAGCAGAGAAAGCACTCCAGAATTTTTCTGGTCATGTAATGCCTAA
TACCGACCGAGCTTTTAAGTTAAACTGGGCATCATATAGCATGGGAGAAAAGCGCGAAGCACTG
CAAGGGTTGAATGGATCAACAATTGGAAAGCAGGCAGTGCGTCTTTCCTGGGGCCGCAGTCCAG
CAAGCAAACAG
						
					

						Genomic sequence
						
							GTGGTCACAATTAAAGTTATTCGTAATAGACATTCTGGAGTTTCTGAGGGTTATGGTTTTGTTG
AGTTCTTTTCTCATGCATCAGCAGAGAAAGCACTCCAGAATTTTTCTGGTCATGTAATGCCTAA
TACCGACCGAGCTTTTAAGTTAAACTGGGCATCATATAGCATGGGAGAAAAGCGCGCCGAACTT
GCTTCTGATCACTCAATATTTGTTGGTGATCTGGCTGTTGATGTTACGGATGAAATGTTGATGG
ATCTTTTTGCCAAAAAATACCGATCTGTGAAAGGAGCTAAAGTTATTATTGATGCAAACACCGG
ACGTTCTAGGGGCTACGGCTTTGTTAGGTTTGGAGATGATAACGACAAAACTCATGCGATGACT
GAAATGAATGGTGCATATTGCTCTACCCGGCCAATTCGTATAGGACCTGCAACACCTAGAAGAT
CTTCAGGTATTACCAAATTTGAAGAGTTTGTTTTGAAGCACTCTGTTTCTGTCCTGCCTATCAT
TTAAAGTTTCCTAAATTTCCAAGTGTTGTAATCTTGTATGGCCTGGTCAGCCTACTTCAGCTTC
AGCGTATGGTCTGGTGGCTAAAGCCAGGGCCAACATATGGGGGGAATATGTGGGTGGGTGTGAA
AGAGTACAATATAGTATCACATTTGAAAACATTCTAGGTTTGATAATTGTTTCTCACTTTCTCC
CATTGGACATATTTTTAATCTTTATATTATTTTTACTTCAGGTGATTCTGGCTCCTCGCCACCA
AGGCAGTCAGATAGTGACTCAACTAACAGGACGGTATGCGCTACTTGTTTACATTGCTAATTTG
TTAGCTTCTAACATAACTTGTAAAGAAAAAAAACATCTTATATCTAATATTGCTGCAGATATAT
GTTGGCGGGCTTGATCCCAACGCTACTGAAGATGAACTAAGGAAAGCATTTGCTAAGTATGGTG
ATCTTGCCTCTGTTAAAATTCCTGTTGGCAAACAGTGTGGTTTTGTTCAATTTGTCAACAGGTA
TATCTAAAACATTTTATCCTTACTCGATGCATCCTTAAGTAATAAATTGTTGAATGCTTAAATA
TTTATCGATTTACTGGTAAAAAATTGAGATCATGTAAAATCGCACATCTTTGTTATGTAGACCT
GATGCAGAAGAAGCACTGCAAGGGTTGAATGGATCAACAATTGGAAAGCAGGCAGTGCGTCTTT
CCTGGGGCCGCAGTCCAGCAAGCAAACAG
						
					

			
		

Sequences
Splice junction sequence	TAGACCTGATGCAGAAGAAGCACTGCAAGGGTTGAATGGATCAACAATTGGAAAGCAGGCAGTG CGTCTTTCCTGGGGCCGCAGTCCAGCAAGCAAACAGgtggtcacaattaaagttattcgtaata gacattctggagtttctgagggttatggttttgttgagttcttttctcatgcatcagcagagaa agcactcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 213 Transcript exons: 21598024-21598078,21598080-21598190,21599222-21599268 GTGGTCACAATTAAAGTTATTCGTAATAGACATTCTGGAGTTTCTGAGGGTTATGTTTTGTTGA GTTCTTTTCTCATGCATCAGCAGAGAAAGCACTCCAGAATTTTTCTGGTCATGTAATGCCTAAT ACCGACCGAGCTTTTAAGTTAAACTGGGCATCATATAGAGCAGGCAGTGCGTCTTTCCTGGGGC CGCAGTCCAGCAAGCAAACAG Transcript length: 267 Transcript exons: 21598024-21598207,21599186-21599268 GTGGTCACAATTAAAGTTATTCGTAATAGACATTCTGGAGTTTCTGAGGGTTATGGTTTTGTTG AGTTCTTTTCTCATGCATCAGCAGAGAAAGCACTCCAGAATTTTTCTGGTCATGTAATGCCTAA TACCGACCGAGCTTTTAAGTTAAACTGGGCATCATATAGCATGGGAGAAAAGCGCGAAGCACTG CAAGGGTTGAATGGATCAACAATTGGAAAGCAGGCAGTGCGTCTTTCCTGGGGCCGCAGTCCAG CAAGCAAACAG
Genomic sequence	GTGGTCACAATTAAAGTTATTCGTAATAGACATTCTGGAGTTTCTGAGGGTTATGGTTTTGTTG AGTTCTTTTCTCATGCATCAGCAGAGAAAGCACTCCAGAATTTTTCTGGTCATGTAATGCCTAA TACCGACCGAGCTTTTAAGTTAAACTGGGCATCATATAGCATGGGAGAAAAGCGCGCCGAACTT GCTTCTGATCACTCAATATTTGTTGGTGATCTGGCTGTTGATGTTACGGATGAAATGTTGATGG ATCTTTTTGCCAAAAAATACCGATCTGTGAAAGGAGCTAAAGTTATTATTGATGCAAACACCGG ACGTTCTAGGGGCTACGGCTTTGTTAGGTTTGGAGATGATAACGACAAAACTCATGCGATGACT GAAATGAATGGTGCATATTGCTCTACCCGGCCAATTCGTATAGGACCTGCAACACCTAGAAGAT CTTCAGGTATTACCAAATTTGAAGAGTTTGTTTTGAAGCACTCTGTTTCTGTCCTGCCTATCAT TTAAAGTTTCCTAAATTTCCAAGTGTTGTAATCTTGTATGGCCTGGTCAGCCTACTTCAGCTTC AGCGTATGGTCTGGTGGCTAAAGCCAGGGCCAACATATGGGGGGAATATGTGGGTGGGTGTGAA AGAGTACAATATAGTATCACATTTGAAAACATTCTAGGTTTGATAATTGTTTCTCACTTTCTCC CATTGGACATATTTTTAATCTTTATATTATTTTTACTTCAGGTGATTCTGGCTCCTCGCCACCA AGGCAGTCAGATAGTGACTCAACTAACAGGACGGTATGCGCTACTTGTTTACATTGCTAATTTG TTAGCTTCTAACATAACTTGTAAAGAAAAAAAACATCTTATATCTAATATTGCTGCAGATATAT GTTGGCGGGCTTGATCCCAACGCTACTGAAGATGAACTAAGGAAAGCATTTGCTAAGTATGGTG ATCTTGCCTCTGTTAAAATTCCTGTTGGCAAACAGTGTGGTTTTGTTCAATTTGTCAACAGGTA TATCTAAAACATTTTATCCTTACTCGATGCATCCTTAAGTAATAAATTGTTGAATGCTTAAATA TTTATCGATTTACTGGTAAAAAATTGAGATCATGTAAAATCGCACATCTTTGTTATGTAGACCT GATGCAGAAGAAGCACTGCAAGGGTTGAATGGATCAACAATTGGAAAGCAGGCAGTGCGTCTTT CCTGGGGCCGCAGTCCAGCAAGCAAACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004019* osi_circ_011886 						
					
						PMCS
						0.424560763

Conservation Information
Conserved circRNAs	osi_circ_004019* osi_circ_011886
PMCS	0.424560763

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0567850_circ_g.2

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