Detail information of Zm00001d042210_circ_igg.1


General Information
CircRNA Name Zm00001d042210_circ_igg.1
ID in PlantcircBase zma_circ_004248
Alias Rctrl_test_circ_002976
Organism Zea mays
Position chr3: 156118093-156122753  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAAACCAACGTCGCCGGCGACCACCAGCGGCCCGTGGAGACGTTTCGGTTGGGGCCACAGTAC
CTGAAGCAGAGACTGTACCAGCTCAGCCCTGCCGAGggacttgaccctggcaatggcgatggtg
aggccgtcacagcggttccgagacgacgcgacgatgaaggggggtatcctgacggcggaacggt
acggcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACTTGACCCTGGCAATGGCGATGGTGAGGCCGTCACAGCGGTTCCGAGACGACGCGACGATG
AAGGGGGGTATCCTGACGGCGGAACGGTACGGCGGCGTGAGGCGGGTGTGCGTCGTCGCCGAGG
ACGACGCGTCAGTGCCGGCAGGCTTCCAGCGGCGGATGGCGTCGTGGAACCCCGGCACGGAGGT
GACGGGGTTGCAGGGAGCCGACCATATGTCCATGCTCTCGAAACCAGGGGAGCTGTCAGAACTT
CTCATGGAGGTTGCCAACAAGTACAGCTGAAACTTGTATCATGTAAATGGCTATCAGCAAAATG
GTTGTTCAGGTACGCTTGTTTCAGATGAACAAATGGAGACGGAAGTTTGAAGTAACACGATGAA
ATAAGACTAGATTTTGTATCCAATGCAGTTGTAACTTTCTAAGGTATAAGGCTATTTCTATCAG
CATATTCATCATCTTTAATTTCAAAGTCTACTCAATTTACGGTGCAAAATTATGTTTTACACGA
CTATATAAACGATATGTTGGATATAACCTAACAAAAACATCATGATATATCTATCCTAGTTGTC
TTAGGGGTTCAACACTGCGTGCCTAACTATATCAAGTACCGTTCACTAAGCAAACTTACATCAA
CCGGACATGAAAAGCTTTACGATTCTCGACGATGTAGCTCTAAGGGCGTGAATAAGTACAACCC
CATTTATCAGGTGGTCTCTTAAAGAGTCTCTAGTGGGTTAATTGAAAAAAAAATTCAAGAGACG
GCCTTTTTATACGATTCTTCATACACATTGTCTCTTAACTTTATTTATGATTCAGAGGGTTATA
CCATGTAGTTTCTTTATTGTCTCATGTACTTAAAAAATCGTTCCACCGTCTTAGGGTTATACAT
GCCCTAATGGGGCATCATTTTTCTCCTCGTTGAAAATCAAGAGTCAAGCTTTATCGTCGCACCC
ATCATAATTTAATGCATCATATCGAGTAGTCAAGCTTTATCGTCGCACCCATCATAATTTAATG
CATCATATCGAGTACCTTGTATTCGGTCATATCAACGTCCGAACCTGAGGAAGATATGGCTATG
ATGGTTTAGTCGAGCGAAAAGAGTGGAAGAAGTGAAATAATAGCAGCAAGAGCAAATTGGAGAT
GAGGGGTATTAATGAATTAAACATCTCTCTATTTATAGGTTGGATTCCAAGATTTTTTTAAAAA
ATGGATTTTTAGACTTCAAAATAGTGTGGACAAATCAGAAAACAACATGTGGTAGCAGACGGTC
GATACAACTGGTTTGGATCGGTATTGGTCGATTTTCCTGTGTGCAAGTCGGTACCGACCAATCC
AACTCTAATGTGTTCGGTATCGACAGAACTGACTAACCAATAGGTCAATCGTCTACTGTTAGAC
TGTCTCTAGTAGATAGGGTAAAATAGGAGACACGAAACTGTAGATGACACTATTTGTTGAGTGG
AGTTTGAAATAGGGGATGAGATAGATGATGAGATAGGGGATCTGCTGAAGATAGCCTTAGAATT
GGATCGATTGGTATCGACATATCGATATGTTAAACACGGCCTAAGATAGACTCTAGAAATTTAA
GGGTTTGCATCCCTTAAAAGTGTCGCTCTGTCCGTGGAACAATGACGACGACAACTGCCCCTTT
CCAGCAGCCTCCAAATCGATGCATGCATTTGTAGATGGCCAACAGTGCCTGGTTAACCGGGACG
GCACGGGGCACGGCATGGCCTATAGTGCCCAAGCACGGCATGGCATGATCGGTGGCGGCCCGTG
CTGGCACGGCCCGACCCCTAGTGTCGTGCTTGGGCTGGCGAGGGGACACGTTGGGCCGACATGG
GCACGAGCCAATTAGGGTTAAAGAACGGTTAGGCACGGCATCCATAAACACATACCCCCCTGCG
GCCCAGCCCCCGCACCCCATCCCCGCCTCCTCTCTCACTCTGTCTCGCCCGAACCCTCTAGCGA
TTTGGAAAGCGCCGCCTCCCTAGCCACCTCCGCCGCCTCCCTCGCCGCCTCTCTACCGCCTCAT
CCGGTGCTCTGGGCCTCTAGCTTAGGTAAGACAGTAAGTTTGTTCCTCTGGTGGTGCTCTCTTG
CTCGCGCCGCCTCTGGTTCTGGTTCGAATCCCTAAGTTTGGTGCTCTGATCTCCAACTTTTGTT
CTTCTTCCAGTCTCCCTCCAACTTCGGTTGCGCTGATCCTCTACGGCTCTCCCTGTACCGATGC
CTAATCGTGTTTTAACCCTAATCATCGAGCCGTCGGGGTTGGATATGGTGCTTCGGCTTTGGTA
GGTTGTTAATACGGTGCTTGTGCTTGTGATCTGTGTTTGTGCTTGTGCAGTTGTGCTTGTGATC
TGTGTTCCAAACCCTAATATAGTTCATCATTTAACTATTTTTGTAGCTATAAGGGACCGATCTG
TTGATCTGGCTTTGGTAAGTTGCTATCATTTGCTTGTTCTTGTGATTTGTGTTTGTCGCCTCTA
TATCTGTGGTTGAACCGACGAACCCTAATCTAGTGTCTTCTGTTCTGTGTTCATAGCCATGAAG
GACCGATCTATGTTCGAACCCTAATCTAGTGCCTTCTTGTTCTATGTTCGTAGCTGTGAAGGAA
CGATCTGGTGCTCTGGCTTTGGTGAGCTCCTAATCTTATGCATGTGCTTGTGGTCTGTGTTTGT
GCTCCCTAATCTAGTGCCTTCTTGTTCTGTGTTTGTAGTCGTGAGGGACCGATCTAGTGCTCCG
ACTTTGGTAAGTTCTTAATCGGGTGCTTGTTCTTGTGATCTATGTTCAAACCCTAATCTAGTGC
CTTCTTGTTATGTGTTTGTAGCCATGAGGGACCGATCTAGTGCTCCGACTTTGGTAAGTTCTTA
ATCTGGTGCTTGTTCTTGTGATTTGTGCTTGTGATCTGTGTTTGAACCATAATGTAGTGTCTTA
TTGTTCTGTGTTTGTAGTCGTGAATGACTTTGACAAGATATATAAGGCTGTTGAGGGTGTGAGG
GTAAGGTGTCATGCTAGTGCAAAGTTTACAAGTGTGTTTTGTCTGCTAAATCATCTGGTGGCAC
TTATCATCTTAATCATCATAGAAATGCATGCAAACTGAAGCATGGCAGAACTGCCTTTGCCTAG
TCCCTGAGTTTAATCTTAATGGTTGTCCTAGATTGTGGGAGTACAATGTTGATGTTGCTAGGTC
TTAGATGTGTGGTTTGATATATAGGCTTGATCTGTGTATTTGCTTTGTTGAATCATCTGCTTTT
GAAAATTACATTCAACAGGCTCATAATCCTAGATTTTTTGCTCTCTCTAGAGTCCAGACAAACA
ACCACTAGCATGGTTTTTTTTTTCCTGTGGCACCTGGTAACAAGACAAGGATGTTTCACCTCTT
CCTCGGTTCCTCCTCCAATTTAAGTGATATTGTGAGCAAGTCGTCCTGATCCCACTAATCGCAG
AGGCGCAGAGCAGAGATGACTAGGGCTGGAAAAAAAGCTCGAGGCTCGCGAGCCGGCTCGGGCT
CGATCAGGCTCGGCTCGGCTCGGTGAGGCTCGCGAGCCTAAACGAGCCCGAGCCGAGCCTAATT
CCATGGCTCGCTACACTAACGAGCCGAGCCGAGCCGGCTCGGTGAGGCTCGCGAGCCGGCTCAA
GGCTCGGTCCAAACTTTTGCAGCTATCACCTGTCAGTTGTCAGTTTGTTTATTAGTGTCCAGTT
ATCTAGATCTAGTGACCAATGTGTTGTTTTGGTCACAACTCACAAGGAACTAGAGTGCAGGGAC
ATAATTTTTTATTATATGGAACATATTGTGCTTCAAATTTAAGCTAATGACCGTAATTATTGTT
GTTGAGTACTTGAGTGTACAGGCTCGCGAGCCGAGCCGAGCCGGCTCGCGAGCCTATATCGAGC
CGAGCCTCATCATCGAGCTCGCGAAGTGACCGAGCCGAGCCTGGCTCGGCTCGCTATTCCACCG
AGCCTCACCGAGCCGAGCCGAGCCTGGCTCGGCTCGTTTCCAGCCCTAGAGACGACCATGGAGA
GTGACAGGAAACGGCAGCATCACTTCTTGCTGGTGCACGGCGTCTGCCACGGCGCGTGGTGCTG
GTACAAGGTGGCCACGCGCTCCTGTCATCCGCGGGCCACCGCGTCACAGCGCTGGACATGGCCG
CGTGCGGCGCCAGCCCCGGGGCGCGCCGAGGAGGTGCCGTCCTTGGAGGAGTACAGCCATCCAT
TCCTGACCGCGTTGGCCGGACTGGCGCCCGAGGAGAAGGCGGTACTCGTCGGCCACAGCTTCGG
CGGGCTGAGCCTCGCGCTCGCCATGGAGCACTGCCCGGAAAGGGTCGCCGTCGCCGTCTTCGTC
TCGTTCCTCATGCCCGCCGCCGGGAAGCCGATGGTGTTCGTCTTCGAGCAGGTAACGAGACGGA
AATCCGGGACCGAGGGTTGTCTGACTGTTTCGCCGAGAAGGGCAAGAAGGGGGTCGAATTTCAG
CCTAACCATGGTTTCCTGATCGATGAACTCTTAGCTGTCGCAAGAAACGCGGCCAGAGGATCGC
TACATGGACTGCGAATTCGAAACCAACGTCGCCGGCGACCACCAGCGGCCCGTGGAGACGTTTC
GGTTGGGGCCACAGTACCTGAAGCAGAGACTGTACCAGCTCAGCCCTGCCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.004541229
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018