Detail information of Zm00001d004139_circ_g.1


General Information
CircRNA Name Zm00001d004139_circ_g.1
ID in PlantcircBase zma_circ_007221
Alias zma_circ_0001106
Organism Zea mays
Position chr2: 85797006-85798992  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d004139
Parent gene annotation E3 ubiquitin-protein ligase UPL3
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d004139_T015:3
Zm00001d004139_T016:3
Zm00001d004139_T009:3
Zm00001d004139_T012:3
Zm00001d004139_T005:3
Zm00001d004139_T002:3
Zm00001d004139_T007:3
Zm00001d004139_T011:3
Zm00001d004139_T003:3
Zm00001d004139_T001:3
Zm00001d004139_T018:3
Zm00001d004139_T010:3
Zm00001d004139_T013:3
Zm00001d004139_T004:1
Zm00001d004139_T006:3
Zm00001d004139_T014:3
Zm00001d004139_T008:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAACCTTTCATGTGAACACCAGAATACACTGGTAAAGAAATGGTCCCAACAGGCAGAGAAGG
AAGTAACTCATCTGCAAGCTTCACAATCTCATTCATctctgaagtgatgtgaccatgtgatggc
ttcagttcaacatctttctctgaagtagcttttctgcgcgcagcattcctagtatgtgggcctt
taggttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGAAGTGATGTGACCATGTGATGGCTTCAGTTCAACATCTTTCTCTGAAGTAGCTTTTCTG
CGCGCAGCATTCCTAGTATGTGGGCCTTTAGGTTCATCCAAACTCAATTTAAGAACAGCTTTTC
CTTTTCCCTTTGAGGTGTTTATGCTTCCCTCCTGATAATCCTTCTTAATTGCACCACTGGTGGC
AGCTGATGACTTTGATCTTAACGATGTGCGACGGACAGATTGAGTTTCTGATGGAATTGAAGGC
GCACAAGCTGTGGAGCTTGCTGCTCCAGATCCAGAATTATTTGCAGATGACATTGGAGGCTTCA
ATACTGGTTCAGTGCGCTGGACTCTAGGCCAAAGAAAATCTTCAACAGCTGCCAGACTAGCTAA
TGAGTCAATAAGAACAACATTGGACGAAAAATCCTTAAGTGACTTCTCACCAGGCGCTCGACAA
AGACGCAATTTGATGGGCTGCGACAGAGATCCTAAACCTGTTGTCAGGCGGGATCCTCCCAAAG
TCGATGCCCTTCCAGAATGGCTGAGCACAACTGGGAAACGTTCCAACGAAGATAGGGCACTTTG
CAGTTTATGGACTAGGAATGCCATAGGAGTTTTATTCCCATCTTTATCATTTGGAAGTGCAAAA
GATATAAATGTTTTGTATCGTCTGACTGCCTGATGACGCAAATTTGGTATGTTTGCCTCAGACA
CCTTTTCCCTCCCAAATGTTCCACATGACAGATAGGTTAGCAAAGCCGTAACAACTCCACTTCC
GATGAACTCAAATGTCGAAACACCATCACCCTTGCTAAGCTCAGACAACATTTCAGCTATTATA
TCATCCAATTGCTCCTCAATATTGCACAAGACATCAAAACTATTGTCAGACACTACCTTTGATT
TTCCTTTAGCTTTTGTTTTGATAGTGTCAGCTGTTGTATTCAGTTTTGCACAAAGTGCCCTCAG
TTTAAGAAGGTCATCGGTAACTGCAATGTCACTTGAGCCAGGCTCGGAAGGGAAATATTTATCC
TTAAATGACTTTGCATGATTACTAACTAAAGCACGAAGACTATTATTTGGAACTTCAGCCATGC
TTGGGGGTGAATTGGCAATCATAGAATTGGAACCTTTTGGTCCATCAGGCAAGTTATTTCCAGT
GTTCACAGCATTATTTCTACGGCGGTTGCGCCTATTATGTGAAGATGTAATGGAATCCACATGA
GGAGTCACCTGACCAGATAATTCTGGGCATATAAGTGACTCAACAGCATGAACAACGCCTTCCC
TCACAAACATCTTCAAAAAAATCTCTGGAAGTTTTTCCATTAAAACTTCTGCTATCTGAAGAGC
AGGGATCAACACTTGTGGATCTTTCCAAGCTAAAATGCCAGCCAAAAAGCTGCAATGGTTGATA
TAGAAGTTAATAGCTTGAAACAAATATTTGGAATTCATGTGATAAGATAGTTTCTAATAACATG
AGATAACTCGATGAAATATATTGTGTTAAGCACCTGGAAATGTTTGTTGTGCTAAGGAGAGACT
GGATCATCTCAGCTGAGCTATAGTACATTAATTTCCCAATGACAGATAAGCACCTGTGCCGTAT
TGGTCCACTTACACTAGAGCCATACACCTGTTCAAGGTATTGAAGTCCTTAAGTATCACACCAA
CATGATAGCAACAATGTCCCGTAATACCACATCAGCATTACCATTAACAACATCAAAGAGAACA
TTAATAAGACAAGACTGACCTGTGTCATGGTAGGTAACAGGTCCATGCCAAATTGCTGCAGAAG
TTCAGGCTGATCACGCAATAACTTCTCCCGACCTGATAGTTCATTTGCTGTTGAACCATGTTCA
CCCTGCTTACTAGAAGTGGATTTCTTTACAGAACAACCTTTCATGTGAACACCAGAATACACTG
GTAAAGAAATGGTCCCAACAGGCAGAGAAGGAAGTAACTCATCTGCAAGCTTCACAATCTCATT
CAT
Conservation Information
Conserved circRNAs NA
PMCS 0.031006069
Functional Information
Coding potential Y
Potential coding position 85798935-85797018(+)
85798994-85797008(-)
Potential amino acid sequence MVPTGREGSNSSASFTISFISEVM*(+)
MNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEHGSTANELSGREKLLRDQP
ELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMIQSLLSTTNISSFLAGILA
WKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPELSGQVTPHVDSITSSHNRR
NRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSNHAKSFKDKYFPSEPGSSD
IAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNIEEQLDDIIAEMLSELSKG
DGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRRYKTFISFALPNDKDGNKT
PMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQPIKLRLCRAPGEKSLKDF
SSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAASSTACAPSIPSETQSVRR
TSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPHTRNAARRKATSEKDVELK
PSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEHGSTANELSG
REKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMIQSLLSTTNI
SSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPELSGQVTPHVD
SITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSNHAKSFKDKY
FPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNIEEQLDDIIA
EMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRRYKTFISFAL
PNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQPIKLRLCRA
PGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAASSTACAPSI
PSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPHTRNAARRKA
TSEKDVELKPSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEH
GSTANELSGREKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMI
QSLLSTTNISSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPEL
SGQVTPHVDSITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSN
HAKSFKDKYFPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNI
EEQLDDIIAEMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRR
YKTFISFALPNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQ
PIKLRLCRAPGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAA
SSTACAPSIPSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPH
TRNAARRKATSEKDVELKPSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKK
STSSKQGEHGSTANELSGREKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKL
MYYSSAEMIQSLLSTTNISSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHA
VESLICPELSGQVTPHVDSITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPN
NSLRALVSNHAKSFKDKYFPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSD
NSFDVLCNIEEQLDDIIAEMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIP
NLRHQAVRRYKTFISFALPNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRL
TTGLGSLSQPIKLRLCRAPGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSS
ANNSGSGAASSTACAPSIPSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKL
SLDEPKGPHTRNAARRKATSEKDVELKPSHGHITSE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b