Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d004139_circ_g.1 |
| ID in PlantcircBase | zma_circ_007221 |
| Alias | zma_circ_0001106 |
| Organism | Zea mays |
| Position | chr2: 85797006-85798992 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d004139 |
| Parent gene annotation |
E3 ubiquitin-protein ligase UPL3 |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d004139_T015:3 Zm00001d004139_T016:3 Zm00001d004139_T009:3 Zm00001d004139_T012:3 Zm00001d004139_T005:3 Zm00001d004139_T002:3 Zm00001d004139_T007:3 Zm00001d004139_T011:3 Zm00001d004139_T003:3 Zm00001d004139_T001:3 Zm00001d004139_T018:3 Zm00001d004139_T010:3 Zm00001d004139_T013:3 Zm00001d004139_T004:1 Zm00001d004139_T006:3 Zm00001d004139_T014:3 Zm00001d004139_T008:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.031006069 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
85798935-85797018(+) 85798994-85797008(-) |
| Potential amino acid sequence |
MVPTGREGSNSSASFTISFISEVM*(+) MNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEHGSTANELSGREKLLRDQP ELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMIQSLLSTTNISSFLAGILA WKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPELSGQVTPHVDSITSSHNRR NRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSNHAKSFKDKYFPSEPGSSD IAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNIEEQLDDIIAEMLSELSKG DGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRRYKTFISFALPNDKDGNKT PMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQPIKLRLCRAPGEKSLKDF SSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAASSTACAPSIPSETQSVRR TSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPHTRNAARRKATSEKDVELK PSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEHGSTANELSG REKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMIQSLLSTTNI SSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPELSGQVTPHVD SITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSNHAKSFKDKY FPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNIEEQLDDIIA EMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRRYKTFISFAL PNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQPIKLRLCRA PGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAASSTACAPSI PSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPHTRNAARRKA TSEKDVELKPSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEH GSTANELSGREKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMI QSLLSTTNISSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPEL SGQVTPHVDSITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSN HAKSFKDKYFPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNI EEQLDDIIAEMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRR YKTFISFALPNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQ PIKLRLCRAPGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAA SSTACAPSIPSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPH TRNAARRKATSEKDVELKPSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKK STSSKQGEHGSTANELSGREKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKL MYYSSAEMIQSLLSTTNISSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHA VESLICPELSGQVTPHVDSITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPN NSLRALVSNHAKSFKDKYFPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSD NSFDVLCNIEEQLDDIIAEMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIP NLRHQAVRRYKTFISFALPNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRL TTGLGSLSQPIKLRLCRAPGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSS ANNSGSGAASSTACAPSIPSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKL SLDEPKGPHTRNAARRKATSEKDVELKPSHGHITSE(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |