Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d004139_circ_g.1 |
ID in PlantcircBase | zma_circ_007221 |
Alias | zma_circ_0001106 |
Organism | Zea mays |
Position | chr2: 85797006-85798992 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d004139 |
Parent gene annotation |
E3 ubiquitin-protein ligase UPL3 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d004139_T015:3 Zm00001d004139_T016:3 Zm00001d004139_T009:3 Zm00001d004139_T012:3 Zm00001d004139_T005:3 Zm00001d004139_T002:3 Zm00001d004139_T007:3 Zm00001d004139_T011:3 Zm00001d004139_T003:3 Zm00001d004139_T001:3 Zm00001d004139_T018:3 Zm00001d004139_T010:3 Zm00001d004139_T013:3 Zm00001d004139_T004:1 Zm00001d004139_T006:3 Zm00001d004139_T014:3 Zm00001d004139_T008:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.031006069 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
85798935-85797018(+) 85798994-85797008(-) |
Potential amino acid sequence |
MVPTGREGSNSSASFTISFISEVM*(+) MNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEHGSTANELSGREKLLRDQP ELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMIQSLLSTTNISSFLAGILA WKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPELSGQVTPHVDSITSSHNRR NRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSNHAKSFKDKYFPSEPGSSD IAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNIEEQLDDIIAEMLSELSKG DGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRRYKTFISFALPNDKDGNKT PMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQPIKLRLCRAPGEKSLKDF SSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAASSTACAPSIPSETQSVRR TSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPHTRNAARRKATSEKDVELK PSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEHGSTANELSG REKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMIQSLLSTTNI SSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPELSGQVTPHVD SITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSNHAKSFKDKY FPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNIEEQLDDIIA EMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRRYKTFISFAL PNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQPIKLRLCRA PGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAASSTACAPSI PSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPHTRNAARRKA TSEKDVELKPSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKKSTSSKQGEH GSTANELSGREKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKLMYYSSAEMI QSLLSTTNISSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVESLICPEL SGQVTPHVDSITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPNNSLRALVSN HAKSFKDKYFPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSDNSFDVLCNI EEQLDDIIAEMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIPNLRHQAVRR YKTFISFALPNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRLTTGLGSLSQ PIKLRLCRAPGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSSANNSGSGAA SSTACAPSIPSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKLSLDEPKGPH TRNAARRKATSEKDVELKPSHGHITSEMNEIVKLADELLPSLPVGTISLPVYSGVHMKGCSVKK STSSKQGEHGSTANELSGREKLLRDQPELLQQFGMDLLPTMTQVYGSSVSGPIRHRCLSVIGKL MYYSSAEMIQSLLSTTNISSFLAGILAWKDPQVLIPALQIAEVLMEKLPEIFLKMFVREGVVHA VESLICPELSGQVTPHVDSITSSHNRRNRRRNNAVNTGNNLPDGPKGSNSMIANSPPSMAEVPN NSLRALVSNHAKSFKDKYFPSEPGSSDIAVTDDLLKLRALCAKLNTTADTIKTKAKGKSKVVSD NSFDVLCNIEEQLDDIIAEMLSELSKGDGVSTFEFIGSGVVTALLTYLSCGTFGREKVSEANIP NLRHQAVRRYKTFISFALPNDKDGNKTPMAFLVHKLQSALSSLERFPVVLSHSGRASTLGGSRL TTGLGSLSQPIKLRLCRAPGEKSLKDFSSNVVLIDSLASLAAVEDFLWPRVQRTEPVLKPPMSS ANNSGSGAASSTACAPSIPSETQSVRRTSLRSKSSAATSGAIKKDYQEGSINTSKGKGKAVLKL SLDEPKGPHTRNAARRKATSEKDVELKPSHGHITSE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |