Detail information of BGIOSGA012924_circ_g.1


General Information
CircRNA Name BGIOSGA012924_circ_g.1
ID in PlantcircBase osi_circ_004892
Alias 3:20163304|20166382
Organism Oryza sativa ssp. indica
Position chr3: 20163304-20166382  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012924
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012924_circ_g.2 BGIOSGA012924_circ_g.3 BGIOSGA012924_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012924-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAATTGATTTTAACAATAATAACCGTTGGAGAAAGCGTGGCATTGCTATGGTTCCCACCAAG
TTTGGGATATCCTTCACCACAAAATTCATGAATCAGgttactggtgaagcggaatatactgatg
acacaccgacaccccccaataccttgcatgctgctctggtgctgagtacgaaagctcacgcacg
catattat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTACTGGTGAAGCGGAATATACTGATGACACACCGACACCCCCCAATACCTTGCATGCTGCTC
TGGTGCTGAGTACGAAAGCTCACGCACGCATATTATCTATTGATGCTTCACTTGCCAAATCTTC
CCCTGGGTTTGCGGGTCTCTTCCTTTCAAAAGACGTGCCTGGCGCTAACCATACTGGGCCTGTT
ATCCATGACGAGGAGGTTTTTGCATCTGATGTTGTTACATGTGTTGGCCAGGTATCTGCTTGTT
CTGGTATCTAGATACACAGGCTTCAATTTTGACACTAGGGATCGGTGAAGTTGATTTTGTTAGT
CTGTTTATCACTTCCTTTTCATCCCTTTGGCAGATTGTTGGACTTGTTGTGGCAGATACCCGTG
ATAATGCAAAAGCTGCTGCAAATAAAGTCAATATTGAGTATTCTGAACTTCCAGCAATTTTATC
CATAGAGGAAGCTGTGAAAGCTGGTAGCTTTCATCCAAATAGCAAGAGATGCCTAGTTAAAGGT
AATGTTGAACAATGTTTTCTGTCGGGTGCATGCGATAGAATTATAGAAGGAAAAGTACAAGTTG
GAGGTCAAGAGCACTTCTACATGGAGCCTCAGAGCACTCTTGTATGGCCAGTTGATTCTGGAAA
TGAAATTCATATGATTTCATCTACCCAGGTATGCTATTCTTTAGATTTTTAAGTCTACTACTTG
TTGCATTTGCATGGAGCCATGAAATATTGATATGGTAGACATACTATGCAACTAATATTTACTT
CAAGATTGATTAGAAATTATACGGAAGCAATTATTGGATAAACTACTTTAGATAGGAAAATGGT
TATATAGAAGAAGGGCTTACAATAAAGCTTTCATGTCAAATGGCAGGGGATTATTTTGCGAACA
GTATTACATTATACTAGAGTTGATATAGTATGATTGGTTTGCTTAAGTGGTATGTTAGATGTGA
GACTATGTATTTGGAGTATGAAAGAGGGTTCTTCAATGTATTAGGAAAATCCACAAAGTTTGGT
GGAAAAAACAAAGCCGGACATGCATTTTTGTATGCAATATATCAGAAGCTTGTCTCTTTTTTTC
TGTAGAAGGTACATAGTAACGAATTTATCAGAAGCTTGCCCAGAATAGTGATTTTTTAATATAA
TCTAGGAGAAAAGAATGTCAAAACCAATCCCCTACCTCAAGATATTGTATTAACATCCTAAAGG
ACTGCAGTATTCTGATCAGCTGTGGCAGACACATGGTACAACTGCCACAGGTGGTGGGACCATT
TTCATGCTAGATTTAACTTATTTAATTTTTATATTCATTGTCCCTAATCAACGTATGGTCTGCA
CAGTCCCAATAGTTGCAAGCTTAATGTCTCTATAACTTCCATCACTTTCTTTAATAAAAGAGAG
GTATAAGCCATATGGAGTATCAGACCTTGAAGGGCCAACTTGATGTTCTACCATAATTAGACCC
ACCTCCTTCCATGCTGCTGTGTAGCTGTCATCGAATTTTGAAACTGCCACATGGTGATGTTCAG
AGTTGACCACACTAAGGTTATGTGGAAGTTTTGTCCCGTCTTTATGGTGTTGATAGTAAATTTT
GCAAAATCTCTAAGATAGGGTATTTTTGAAAATTTGTTCTTAGTTTTCTTCTAAATTACAGTCT
TAAGGAAGTACTTTGAGTTGCAAAATATATTAACGTGAACATGGAATATAAATACAAAACATGA
GAGCCACGTTATTTAATATGATGAATTTAGGTACTAGAATAACTATTTAGCACTAACCAAATTG
AAGCAAAGCATTTCTGTTTACCATTTTTTATTTTGTGGGGTGTCTTGCTACCAGTTACTTTTGT
CCATGTTTGTTTTCTGGCACTGAATGTGCAACGGTGTTGTTTGACCAAATGTTATTTGTCTTAA
GGCTCCCCAGAAGCACCAAAAGTATGTTGCTAATGTTCTTGGTCTTCCACAATCAAGAGTTGTT
TGCAAGACTAAGCGTATTGGTGGTGGATTTGGTGGAAAAGAAACCAGATCAGCAATATTTGCTG
CAGCAGCATCTGTAGCTGCTTATTGTTTAAGGCAGCCTGTAAAGCTTGTTTTGGACAGGGATAT
TGACATGATGACAACTGGACAGAGGCACAGTTTCCTAGGGAAGTACAAGGTAAGTGGTTTCAAA
GAGTATGCTTTTTCAATCTCGCTGCTTTGACATCTGTTTTCCAGTCTATTTTGACAATTGTCTC
TGATGAGTGATGACTGGAGTTTGATTAGCTCAGAGCAAATAAGTTGATTTGTTCTGGACAGTTG
AAAGGCCTGTACTTGCAACAGCCATGCATTGTTAAAGATAAATTTGAATGCTATGTGCTAACTG
GTCAATATTTTGCACTACTGTCATGTAACGTGGATATAAACTGTGGAGGCTTGGCCTGTCTATA
GCGAACACTAAACTTTCTCTGGCCAAATACTTTGAAATTTACCTGACTTGCTATTAAACTTTCA
GGTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTATAACAATGGTGGT
CATTCACATGATTTGTCCCTTCCAGTCCTGGAGCGTGCTATGTTTCATTCAGACAATGTCTATG
ATATACCAAATGTCAGAGTCAATGGGCAAGTATGTTTCACAAATTTCCCAAGCAATACTGCTTT
CAGAGGTTTTGGTGGTCCACAAGCTATGCTGATTGCAGAGAATTGGATTCAGCACATGGCTACA
GAACTCAAGCGAAGTCCTGAGGAGATAAAAGTAAGTATAACCAGTTTTTGCGGTGGTCCTGTTC
TGCTTATACTATTGTGGGGTTAATTCATTGATTGTTTTCAGGAACTTAATTTTCAAAGTGAGGG
ATCTGTGCTTCATTATGGCCAGTTGCTTCAAAATTGTACAATACATTCAGTATGGGATGAACTA
AAGGTTTCTTGTAATTTTATGGAAGCTCGCAAAGCTGTAATTGATTTTAACAATAATAACCGTT
GGAGAAAGCGTGGCATTGCTATGGTTCCCACCAAGTTTGGGATATCCTTCACCACAAAATTCAT
GAATCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 20163362-20166247(-)
20163901-20166379(+)
Potential amino acid sequence MQGIGGCRCVISIFRFTSNLIHEFCGEGYPKLGGNHSNATLSPTVIIVKINYSFASFHKITRNL
*(-)
MEPQSTLVWPVDSGNEIHMISSTQAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAI
FAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSH
DLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELK
RSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIA
MVPTKFGISFTTKFMNQVTGEAEYTDDTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFA
GLFLSKDVPGANHTGPVIHDEEVFASDVVTCVGQIVGLVVADTRDNAKAAANKVNIEYSELPAI
LSIEEAVKAGSFHPNSKRCLVKGNVEQCFLSGACDRIIEGKVQVGGQEHFYMEPQSTLVWPVDS
GNEIHMISSTQAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLR
QPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFH
SDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQS
EGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTK
FMNQVTGEAEYTDDTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFAGLFLSKDVPGANH
TGPVIHDEEVFASDVVTCVGQIVGLVVADTRDNAKAAANKVNIEYSELPAILSIEEAVKAGSFH
PNSKRCLVKGNVEQCFLSGACDRIIEGKVQVGGQEHFYMEPQSTLVWPVDSGNEIHMISSTQAP
QKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLRQPVKLVLDRDIDM
MTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRVN
GQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQN
CTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQVTGEAEYTD
DTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFAGLFLSKDVPGANHTGPVIHDEEVFAS
DVVTCVGQIVGLVVADTRDNAKAAANKVNIEYSELPAILSIEEAVKAGSFHPNSKRCLVKGNVE
QCFLSGACDRIIEGKVQVGGQEHFYMEPQSTLVWPVDSGNEIHMISSTQAPQKHQKYVANVLGL
PQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKY
KVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTA
FRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVS
CNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021