Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA012924_circ_g.1 |
ID in PlantcircBase | osi_circ_004892 |
Alias | 3:20163304|20166382 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 20163304-20166382 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA012924 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA012924_circ_g.2 BGIOSGA012924_circ_g.3 BGIOSGA012924_circ_g.4 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA012924-TA:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
20163362-20166247(-) 20163901-20166379(+) |
Potential amino acid sequence |
MQGIGGCRCVISIFRFTSNLIHEFCGEGYPKLGGNHSNATLSPTVIIVKINYSFASFHKITRNL *(-) MEPQSTLVWPVDSGNEIHMISSTQAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAI FAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSH DLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELK RSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIA MVPTKFGISFTTKFMNQVTGEAEYTDDTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFA GLFLSKDVPGANHTGPVIHDEEVFASDVVTCVGQIVGLVVADTRDNAKAAANKVNIEYSELPAI LSIEEAVKAGSFHPNSKRCLVKGNVEQCFLSGACDRIIEGKVQVGGQEHFYMEPQSTLVWPVDS GNEIHMISSTQAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLR QPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFH SDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQS EGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTK FMNQVTGEAEYTDDTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFAGLFLSKDVPGANH TGPVIHDEEVFASDVVTCVGQIVGLVVADTRDNAKAAANKVNIEYSELPAILSIEEAVKAGSFH PNSKRCLVKGNVEQCFLSGACDRIIEGKVQVGGQEHFYMEPQSTLVWPVDSGNEIHMISSTQAP QKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLRQPVKLVLDRDIDM MTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRVN GQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQN CTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQVTGEAEYTD DTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFAGLFLSKDVPGANHTGPVIHDEEVFAS DVVTCVGQIVGLVVADTRDNAKAAANKVNIEYSELPAILSIEEAVKAGSFHPNSKRCLVKGNVE QCFLSGACDRIIEGKVQVGGQEHFYMEPQSTLVWPVDSGNEIHMISSTQAPQKHQKYVANVLGL PQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKY KVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTA FRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVS CNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |