Detail information of BGIOSGA029085_circ_g.1


General Information
CircRNA Name BGIOSGA029085_circ_g.1
ID in PlantcircBase osi_circ_018116
Alias Chr08:28297058_28298085(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 28758624-28759651  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA029085
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA029085_circ_igg.1 BGIOSGA029085_circ_g.2 BGIOSGA029085_circ_g.3 BGIOSGA029085_circ_igg.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered BGIOSGA029085-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATGTCTATGCTTGCTGAAATATTTATGTCCATATTACTAGTGTATGTACCTCTCATTTGTTT
TCTTTGAACATTTCAGGTTATGTCTGGGTTCATGGGccagtgaactgtgagactgtttctaggt
ggatattaaagaatagcgcagaatctgaaaatatgaactggtatggttcaggctcaaaacttta
ttaagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGA
ACTGGTATGGTTCAGGCTCAAAACTTTATTAAGCCATAGTGTACGGATAGTGTATAGATAAGGA
ATTCATTAATTTTTGTGGAGATAAATCTATGTTCAAACATTTGTGTTGTATATTTACTTCTTTT
TTTAACCTATCCTTGATGCCAATATTGCAGCTATCTTCTAACTTTCCTCATGGTTATGAGTAAA
AACTGAGGTGGTGAAAAAAATTGTGCATTTAATTTACGTACGTATATTCAGATGTTATGTATTC
AGAAACATCAAACTTTGTGGACATCCTCATGTGTGACTAGTGGTCTGGAAGCAGAAGATTTGAG
GATGCAAGGAACTGTGAACACTATTAACTCTTTGCTGAGTCAGGGCTGCAAGGGCTGATGCATT
GTTTTTTAACAATATATTATGACGGAAAACATGTATTATATGTGGCACTGTGGCTTAAACCTCA
TAATAAACACCTCTTAATTTATGTTAAATACTTGGCATTGACTCCATTTTTATCAATTGATGAC
TTCTTTTTATGGAAAAACTTGTGGAGGCTCTAGTGAGAACATTATGCTGCTCAAGCGTTTTTGC
CATGTTTACATTACAGGAATGTTTGCCTATTATACAATGCTGTTAGAATTGTATACCAATCTTC
AGTTCATGGCTAGTCCATTAATGCTCAAATGTATTTAAGGTCTTTATGTTGCTTGAAATCATCT
AATCATGTCAGATGGTTTATCATGTTGTTGATGATCCTTTTCAGGATACTGGCTAATTCTAAGC
CGTGCCCAAAATGCAAACGACCAATAGAGAAAAACCAGGGATGCATGCATATGACTTGCACTCC
ACCTTGCAAATTTGAGTTCTGCTGGTATAGTCCAATGTCTATGCTTGCTGAAATATTTATGTCC
ATATTACTAGTGTATGTACCTCTCATTTGTTTTCTTTGAACATTTCAGGTTATGTCTGGGTTCA
TGGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021