Detail information of BGIOSGA015647_circ_g.1


General Information
CircRNA Name BGIOSGA015647_circ_g.1
ID in PlantcircBase osi_circ_014658
Alias Chr04:3549519_3549869(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 2716138-2716488  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA015647
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015647-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATTTTATCTGTTCAAACATATCATCTACTCTTCTTGATACAGGTGCTCGCCTCAATGAGGG
GCTCTCTTCAAACACATCAAAAGGTTCGGCCATTTGccttggcatttatcttcaatagcaaatt
gagtaggtactgatcattgactctttgtggagcaaggcattgtgtgacaataccgaattcagca
agacactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGCATTTATCTTCAATAGCAAATTGAGTAGGTACTGATCATTGACTCTTTGTGGAGCAAG
GCATTGTGTGACAATACCGAATTCAGCAAGACACTTCCTCTTCCAAGGACCTGGTTGAAACAAA
ACAATGTAAATTTTGCAAGGGAGTGAATGACTTTAGGGAGTGGAAACAATGACGAACCATAAAC
TTCACAATTTTTCCTCTCAGGAAGAAGGCACAAGAGGAATTTCGGAGCTCCAGGAAGTTTTGAT
TTTATCTGTTCAAACATATCATCTACTCTTCTTGATACAGGTGCTCGCCTCAATGAGGGGCTCT
CTTCAAACACATCAAAAGGTTCGGCCATTTG
Conservation Information
Conserved circRNAs osa_circ_022990
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021