Plant Circular RNA Database

Detail information of Os03g0157500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0157500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_018015
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 3092674-3095119  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0157500						
					
						Parent gene annotation
						
							Similar to FH protein interacting protein FIP2. (Os03t0157500-01
)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0157500_circ_g.2 Os03g0157500_circ_g.3 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0157500-01:7

General Information
CircRNA Name	Os03g0157500_circ_g.1
ID in PlantcircBase	osa_circ_018015
Alias	NA
Organism	Oryza sativa
Position	chr3: 3092674-3095119 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0157500
Parent gene annotation	Similar to FH protein interacting protein FIP2. (Os03t0157500-01 )
Parent gene strand	+
Alternative splicing	Os03g0157500_circ_g.2 Os03g0157500_circ_g.3
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0157500-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGCTAGTCTGATTTGCAGGGAGCTAAGTTGGCCGGTACAAACTTGGAATGTGCAAATCTTCAG
CGAGCCTACTTGCGAGAAGTTGATTTGCGCGAAACTggcttggctgattgcataaatgatagat
tgggttggaaaaatgatgagaatttctcggaggccgaattgacacgcaaagatgtgatcaagtg
catccaag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCG
AATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAA
TCTATCTGGCCTTGATCTATCCAAACTTGTAAGGTCTTTATTGTTGTTCTCTATTGGAGTTGCT
CATTTTTTGTTATGGTTATTACCACTCCATTCTAGTTGCTCTTAGCAACTCTGATTTCGTGTGT
GTTCAACAGAAATCAATAAAGCATTTTATTTTTTTTCTTTAGTTTCTTGTAATTTTGTGACTTT
TACGGTCTACAGGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTT
CCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGGTATGCCATTCACACCTAAGTTCTTCGTTGTT
TAACTGCTTTTGATGAAGTAGTAGCCCTTAGGAACTATGCTAGTTATCATAATATTTTAAGGCA
TTTTAGTTCTGTCACAAAAAAATATCTAAGTCTTTGTTTTTTGTATGACTGTCAAATGTTGTAT
CAGTAATACCTTACCTTGTATGTTCATGACAGCTGACAGAAGCTACTTGTTCTTCATTCCAAAG
TGCAAATTTACATGAGTAAGATGGTCCAACCAGTTTCTTTTAGCTTATAGATAGGCTCTAAGAT
GAAACACGGTCTCTCCTTTTTTACTTTTGTGTTTTTTTTTTGTGTTGGATGCATAAGCAAGCAG
CTAACCATCTATTTCCTCCTTTTTGTGTTATTTTTGTTTCGCTGTGTTATTGTAATTGCTTGAT
TTGGAATAACAGGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAAC
CTTCAAAGTGCAAACCTACAGGGTATGTAATCCCTTTCTTTACCTGTCTTCCGTTTTATGTTAT
ATGTTTCCAAAAAATACTATTATGCTCAGGATTATCCTGTTTCTTCATTTTCTTGGCTTTTGAC
ATCCTTTTCACCAGGGAAGATCATCGTCCCTGTAGTATTAGACAATGTAGCTATGCCTATTTTG
CTTTCACTCTCTCCTATTCAGGGTGTGCTTATATTCTTGTAAAAACTAAGTAGGAAATGATTGA
GTTGCTAGGCTTATTTTGCAGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATCTTCG
TTCTGCTCATCTACAGGTTTGAAAGTTTATTGTACATGGTGTGTTTCATGAATGTTCCCAGATT
CTCGCGCTGCTATTCTGCTAACATATTGCATTCCTGGTCAGTATACAAGAAAAAGTGAAAATCA
TGATGAACATTAGCATAAAGCAAAGCATTTCTGTTTTTTTTTAGAAGTTAGTTTTCTGCTGCTA
GAGGTGATCGAATATCTAGTTTCCATCCTTGCAATATTTTGTATCATCCAAACTTCCAAAGTTT
GGCTGCAAAATTTTGTCCTTGCCCAAAGTATTATCTGCAACACATAGACATATATTTTGTCCGT
ACAGGCTTGTATCGTCTCTTCCTGAACATTTGAATATAAGGCATAAAGGCTCCCTATTCCAAAT
GGTTTTCAGTAACTTAAAATACGTTGATATTTGGGTTCTTATTACTCATTTCCTCAGTGTCTTA
TTGTCAGTCCAACTGGATTTTCAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATC
TTGAAGGGGCCAATCTCAAGGTAACAAAAATGGCCCCATTCAACCTGCACTTTCATCCTGCCTG
TCATATGTAACTTAAGGAAAGCTACTTGAGGGGGTTAACCACAGAGCTCTTACACAAAGACAGA
AAAAATGATTCTAATGTATCCAACTCTTCTTTTACTGCCAAGCTTGAAATAAAGTGTCTGAAGT
TTGCACTAGGAAATAACTCTAGAAGAAAATCACCAGGAGATGTTCCAAAGGCATGAACTGATGC
TGAGATGTGCATGTCATGTTTTGCTTACAAAATATTAACAAATAGGGATTTGCGAAAGAGATGG
TAATCATCTTAATTGATGATAATGCTTGCATATAAGGTTTTCTTTTTTGTAAACATGTGATGTT
TGACATGAGTGAAAAGGTTTCGACCTGTAGTAAGTGTGATAACAGTGCAAACCCGTTATACTTA
GAACCATGAAACCATGACTGTTTGATATGAAATCATGGTTAATCGTGTACTGAAGTGTACATTA
ACGAAAGGTCATTGGCATTAACACCAATCCCTCTTTTCTTGTGCCTTAACTGACAACCCAGTTC
CTTGTCCTCGCTTTGTTATTCAAACTTCTTTATCCGTACTCTAAGCTAGTCTGATTTGCAGGGA
GCTAAGTTGGCCGGTACAAACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGAGAAGTTG
ATTTGCGCGAAACT
						
					

			
		

Sequences
Splice junction sequence	AAGCTAGTCTGATTTGCAGGGAGCTAAGTTGGCCGGTACAAACTTGGAATGTGCAAATCTTCAG CGAGCCTACTTGCGAGAAGTTGATTTGCGCGAAACTggcttggctgattgcataaatgatagat tgggttggaaaaatgatgagaatttctcggaggccgaattgacacgcaaagatgtgatcaagtg catccaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCG AATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAA TCTATCTGGCCTTGATCTATCCAAACTTGTAAGGTCTTTATTGTTGTTCTCTATTGGAGTTGCT CATTTTTTGTTATGGTTATTACCACTCCATTCTAGTTGCTCTTAGCAACTCTGATTTCGTGTGT GTTCAACAGAAATCAATAAAGCATTTTATTTTTTTTCTTTAGTTTCTTGTAATTTTGTGACTTT TACGGTCTACAGGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTT CCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGGTATGCCATTCACACCTAAGTTCTTCGTTGTT TAACTGCTTTTGATGAAGTAGTAGCCCTTAGGAACTATGCTAGTTATCATAATATTTTAAGGCA TTTTAGTTCTGTCACAAAAAAATATCTAAGTCTTTGTTTTTTGTATGACTGTCAAATGTTGTAT CAGTAATACCTTACCTTGTATGTTCATGACAGCTGACAGAAGCTACTTGTTCTTCATTCCAAAG TGCAAATTTACATGAGTAAGATGGTCCAACCAGTTTCTTTTAGCTTATAGATAGGCTCTAAGAT GAAACACGGTCTCTCCTTTTTTACTTTTGTGTTTTTTTTTTGTGTTGGATGCATAAGCAAGCAG CTAACCATCTATTTCCTCCTTTTTGTGTTATTTTTGTTTCGCTGTGTTATTGTAATTGCTTGAT TTGGAATAACAGGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAAC CTTCAAAGTGCAAACCTACAGGGTATGTAATCCCTTTCTTTACCTGTCTTCCGTTTTATGTTAT ATGTTTCCAAAAAATACTATTATGCTCAGGATTATCCTGTTTCTTCATTTTCTTGGCTTTTGAC ATCCTTTTCACCAGGGAAGATCATCGTCCCTGTAGTATTAGACAATGTAGCTATGCCTATTTTG CTTTCACTCTCTCCTATTCAGGGTGTGCTTATATTCTTGTAAAAACTAAGTAGGAAATGATTGA GTTGCTAGGCTTATTTTGCAGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATCTTCG TTCTGCTCATCTACAGGTTTGAAAGTTTATTGTACATGGTGTGTTTCATGAATGTTCCCAGATT CTCGCGCTGCTATTCTGCTAACATATTGCATTCCTGGTCAGTATACAAGAAAAAGTGAAAATCA TGATGAACATTAGCATAAAGCAAAGCATTTCTGTTTTTTTTTAGAAGTTAGTTTTCTGCTGCTA GAGGTGATCGAATATCTAGTTTCCATCCTTGCAATATTTTGTATCATCCAAACTTCCAAAGTTT GGCTGCAAAATTTTGTCCTTGCCCAAAGTATTATCTGCAACACATAGACATATATTTTGTCCGT ACAGGCTTGTATCGTCTCTTCCTGAACATTTGAATATAAGGCATAAAGGCTCCCTATTCCAAAT GGTTTTCAGTAACTTAAAATACGTTGATATTTGGGTTCTTATTACTCATTTCCTCAGTGTCTTA TTGTCAGTCCAACTGGATTTTCAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATC TTGAAGGGGCCAATCTCAAGGTAACAAAAATGGCCCCATTCAACCTGCACTTTCATCCTGCCTG TCATATGTAACTTAAGGAAAGCTACTTGAGGGGGTTAACCACAGAGCTCTTACACAAAGACAGA AAAAATGATTCTAATGTATCCAACTCTTCTTTTACTGCCAAGCTTGAAATAAAGTGTCTGAAGT TTGCACTAGGAAATAACTCTAGAAGAAAATCACCAGGAGATGTTCCAAAGGCATGAACTGATGC TGAGATGTGCATGTCATGTTTTGCTTACAAAATATTAACAAATAGGGATTTGCGAAAGAGATGG TAATCATCTTAATTGATGATAATGCTTGCATATAAGGTTTTCTTTTTTGTAAACATGTGATGTT TGACATGAGTGAAAAGGTTTCGACCTGTAGTAAGTGTGATAACAGTGCAAACCCGTTATACTTA GAACCATGAAACCATGACTGTTTGATATGAAATCATGGTTAATCGTGTACTGAAGTGTACATTA ACGAAAGGTCATTGGCATTAACACCAATCCCTCTTTTCTTGTGCCTTAACTGACAACCCAGTTC CTTGTCCTCGCTTTGTTATTCAAACTTCTTTATCCGTACTCTAAGCTAGTCTGATTTGCAGGGA GCTAAGTTGGCCGGTACAAACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGAGAAGTTG ATTTGCGCGAAACT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.103590924

Conservation Information
Conserved circRNAs	NA
PMCS	0.103590924

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3094375-3095116(+)
3092770-3095091(-)
						
						Potential amino acid sequence
						
							MGANLSGANLEGANLKGAKLAGTNLECANLQRAYLREVDLRETGLADCINDRLGWKNDENFSEA
ELTRKDVIKCIQAPRVRFRGVNLSGLDLSKLDLSEVDFSYACIKNANFSSAYLRKAKFRLTEAT
CSSFQSANLHECELIGANLEGSVLDKANLQSANLQDACLKQCCFIETDLRSAHLQGANLMGANL
SGANLEGANLKGAKLAGTNLECANLQRAYLREVDLRETGLADCINDRLGWKNDENFSEAELTRK
DVIKCIQAPRVRFRGVNLSGLDLSKLDLSEVDFSYACIKNANFSSAYLRKAKFRLTEATCSSFQ
SANLHECELIGANLEGSVLDKANLQSANLQDACLKQCCFIETDLRSAHLQGANLMGANLSGANL
EGANLKGAKLAGTNLECANLQRAYLREVDLRETGLADCINDRLGWKNDENFSEAELTRKDVIKC
IQAPRVRFRGVNLSGLDLSKLDLSEVDFSYACIKNANFSSAYLRKAKFRLTEATCSSFQSANLH
ECELIGANLEGSVLDKANLQSANLQDACLKQCCFIETDLRSAHLQGANLMGANLSGANLEGANL
KGAKLAGTNLECANLQRAYLREVDLRET(+)
MHLITSLRVNSASEKFSSFFQPNLSFMQSAKPVSRKSTSRK*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3094375-3095116(+) 3092770-3095091(-)
Potential amino acid sequence	MGANLSGANLEGANLKGAKLAGTNLECANLQRAYLREVDLRETGLADCINDRLGWKNDENFSEA ELTRKDVIKCIQAPRVRFRGVNLSGLDLSKLDLSEVDFSYACIKNANFSSAYLRKAKFRLTEAT CSSFQSANLHECELIGANLEGSVLDKANLQSANLQDACLKQCCFIETDLRSAHLQGANLMGANL SGANLEGANLKGAKLAGTNLECANLQRAYLREVDLRETGLADCINDRLGWKNDENFSEAELTRK DVIKCIQAPRVRFRGVNLSGLDLSKLDLSEVDFSYACIKNANFSSAYLRKAKFRLTEATCSSFQ SANLHECELIGANLEGSVLDKANLQSANLQDACLKQCCFIETDLRSAHLQGANLMGANLSGANL EGANLKGAKLAGTNLECANLQRAYLREVDLRETGLADCINDRLGWKNDENFSEAELTRKDVIKC IQAPRVRFRGVNLSGLDLSKLDLSEVDFSYACIKNANFSSAYLRKAKFRLTEATCSSFQSANLH ECELIGANLEGSVLDKANLQSANLQDACLKQCCFIETDLRSAHLQGANLMGANLSGANLEGANL KGAKLAGTNLECANLQRAYLREVDLRET(+) MHLITSLRVNSASEKFSSFFQPNLSFMQSAKPVSRKSTSRK*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0157500_circ_g.1

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