Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d052282_circ_g.2 |
ID in PlantcircBase | zma_circ_001778 |
Alias | circ41 |
Organism | Zea mays |
Position | chr4: 185941902-185946532 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | KNIFE |
Parent gene | Zm00001d052282 |
Parent gene annotation |
Nuclear-pore anchor |
Parent gene strand | + |
Alternative splicing | Zm00001d052282_circ_g.3 |
Support reads | NA |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d052282_T080:12 Zm00001d052282_T029:12 Zm00001d052282_T061:12 Zm00001d052282_T066:11 Zm00001d052282_T030:12 Zm00001d052282_T045:12 Zm00001d052282_T064:12 Zm00001d052282_T052:11 Zm00001d052282_T093:12 Zm00001d052282_T069:12 Zm00001d052282_T049:12 Zm00001d052282_T095:12 Zm00001d052282_T047:12 Zm00001d052282_T090:12 Zm00001d052282_T057:12 Zm00001d052282_T079:12 Zm00001d052282_T058:12 Zm00001d052282_T040:12 Zm00001d052282_T007:12 Zm00001d052282_T063:12 Zm00001d052282_T003:11 Zm00001d052282_T001:12 Zm00001d052282_T072:12 Zm00001d052282_T088:12 Zm00001d052282_T084:12 Zm00001d052282_T024:12 Zm00001d052282_T004:12 Zm00001d052282_T091:12 Zm00001d052282_T015:12 Zm00001d052282_T089:12 Zm00001d052282_T002:11 Zm00001d052282_T013:11 Zm00001d052282_T070:12 Zm00001d052282_T092:12 Zm00001d052282_T017:12 Zm00001d052282_T074:11 Zm00001d052282_T097:12 Zm00001d052282_T054:12 Zm00001d052282_T041:12 Zm00001d052282_T077:12 Zm00001d052282_T042:12 Zm00001d052282_T006:12 Zm00001d052282_T005:12 Zm00001d052282_T082:12 Zm00001d052282_T034:12 Zm00001d052282_T019:12 Zm00001d052282_T038:12 Zm00001d052282_T086:12 Zm00001d052282_T051:12 Zm00001d052282_T025:12 Zm00001d052282_T036:12 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.070971131 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |