Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d052282_circ_g.2 |
| ID in PlantcircBase | zma_circ_001778 |
| Alias | circ41 |
| Organism | Zea mays |
| Position | chr4: 185941902-185946532 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ui-circRNA |
| Identification method | KNIFE |
| Parent gene | Zm00001d052282 |
| Parent gene annotation |
Nuclear-pore anchor |
| Parent gene strand | + |
| Alternative splicing | Zm00001d052282_circ_g.3 |
| Support reads | NA |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | GT-CA |
| Number of exons covered | Zm00001d052282_T080:12 Zm00001d052282_T029:12 Zm00001d052282_T061:12 Zm00001d052282_T066:11 Zm00001d052282_T030:12 Zm00001d052282_T045:12 Zm00001d052282_T064:12 Zm00001d052282_T052:11 Zm00001d052282_T093:12 Zm00001d052282_T069:12 Zm00001d052282_T049:12 Zm00001d052282_T095:12 Zm00001d052282_T047:12 Zm00001d052282_T090:12 Zm00001d052282_T057:12 Zm00001d052282_T079:12 Zm00001d052282_T058:12 Zm00001d052282_T040:12 Zm00001d052282_T007:12 Zm00001d052282_T063:12 Zm00001d052282_T003:11 Zm00001d052282_T001:12 Zm00001d052282_T072:12 Zm00001d052282_T088:12 Zm00001d052282_T084:12 Zm00001d052282_T024:12 Zm00001d052282_T004:12 Zm00001d052282_T091:12 Zm00001d052282_T015:12 Zm00001d052282_T089:12 Zm00001d052282_T002:11 Zm00001d052282_T013:11 Zm00001d052282_T070:12 Zm00001d052282_T092:12 Zm00001d052282_T017:12 Zm00001d052282_T074:11 Zm00001d052282_T097:12 Zm00001d052282_T054:12 Zm00001d052282_T041:12 Zm00001d052282_T077:12 Zm00001d052282_T042:12 Zm00001d052282_T006:12 Zm00001d052282_T005:12 Zm00001d052282_T082:12 Zm00001d052282_T034:12 Zm00001d052282_T019:12 Zm00001d052282_T038:12 Zm00001d052282_T086:12 Zm00001d052282_T051:12 Zm00001d052282_T025:12 Zm00001d052282_T036:12 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.070971131 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |