Detail information of BGIOSGA016431_circ_g.2


General Information
CircRNA Name BGIOSGA016431_circ_g.2
ID in PlantcircBase osi_circ_014366
Alias Chr04:21718510_21718892(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19232730-19233112  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016431
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016431_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016431-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTTAAATGAAACTAGTGATGTCTATAGTTTTGGAATTCTTATCATGGAAATAATATCTGGT
CGGGTACCAGTGGATTACAACAGACCACCAGGGGAGgcttaatgtatctgcatgagggacttga
gccaaaggtggttcatcgtgatgtcaagtcgagcaacatcctccttgacaagacctggaatgct
aagctttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGTCAAGTCGAGCAA
CATCCTCCTTGACAAGACCTGGAATGCTAAGCTTTCTGATTTTGGGCTAGCAAAGCTTTTGGGC
TCAGAGAGGAGTTATGTAACAACCAGAGTTATGGGGACATTTGGGTTAGAAATTAGCACCCTTG
TAATGTGATAATTGTACGGGACACATGAATATTGTGCTTATGCATCTTTTGTTCTTTGCAGGTA
CGTAGCTCCAGAGTATGCTGGTACTGGCATGTTAAATGAAACTAGTGATGTCTATAGTTTTGGA
ATTCTTATCATGGAAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAG
Conservation Information
Conserved circRNAs osa_circ_023844
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021