Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.007G296200_circ_g.1 |
| ID in PlantcircBase | gra_circ_000771 |
| Alias | Chr07:50681903|50683811 |
| Organism | Gossypium raimondii |
| Position | chrChr07: 50681903-50683811 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.007G296200 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 4/4 |
| Tissues | leaf/ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Gorai.007G296200.1:5 Gorai.007G296200.2:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | ghi_circ_000401* |
| PMCS | 0.937781159 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
50681921-50683808(+) |
| Potential amino acid sequence |
MSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDDDDDDDDGWEFKA AEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKPGEWDLGFSFSPS FESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADASSSAVEGFSFDG HIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDTRSNISINDLISS LYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSGTGGENQNSSFSF GDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDAEVKAIEEEILSN PNVRMSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDDDDDDDDGW EFKAAEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKPGEWDLGFS FSPSFESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADASSSAVEGF SFDGHIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDTRSNISIND LISSLYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSGTGGENQNS SFSFGDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDAEVKAIEEE ILSNPNVRMSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDDDDDD DDGWEFKAAEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKPGEWD LGFSFSPSFESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADASSSA VEGFSFDGHIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDTRSNI SINDLISSLYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSGTGGE NQNSSFSFGDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDAEVKA IEEEILSNPNVRMSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDD DDDDDDGWEFKAAEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKP GEWDLGFSFSPSFESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADA SSSAVEGFSFDGHIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDT RSNISINDLISSLYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSG TGGENQNSSFSFGDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDA EVKAIEEEIL(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |