Detail information of orai.007G296200_circ_g.1


General Information
CircRNA Name orai.007G296200_circ_g.1
ID in PlantcircBase gra_circ_000771
Alias Chr07:50681903|50683811
Organism Gossypium raimondii
Position chrChr07: 50681903-50683811  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.007G296200
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads 4/4
Tissues leaf/ovule
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Gorai.007G296200.1:5
Gorai.007G296200.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTTTGTTTCTGAAATATGCTTTTAATTAGAAAGATAAAAGTACTGCTGCTCCTTCTGGTGAA
GATGCTGAAGTAAAAGCTATTGAGGAGGAAATCCTGagtaatccaaatgtgcgaatgtcgaatt
gcaatatgtctacttcgagttgggatccattgggtacaaataccagtgtgctgagttcaaatat
taatgggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1164
Transcript exons: 50681903-50682151,50682437-50682721,50682821-50682889,50
683154-50683645,50683743-50683811
AGTAATCCAAATGTGCGAATGTCGAATTGCAATATGTCTACTTCGAGTTGGGATCCATTGGGTA
CAAATACCAGTGTGCTGAGTTCAAATATTAATGGGGTAAACGCAAATGCAAGTAGGTTGGACTC
TAATTTAGTTGATGAAAATGATAAGACTAGTGTTGATGATGATGATGATGATGATGATGATGAT
GGATGGGAATTCAAGGCTGCAGAGCCCGAGACTCGCTTCACAACCGGTGATGCTAAGGTTGAGG
ACCAGGATCGGGAAAAACCTCAGGGAGCTGAATTCAGCTTTGGGTTTGGGCATGGCGCAAATGG
TTCTAGTGATTTCTTTGGCACATCAGATGGAATATCTAAGAAACCTGGTGAATGGGACTTAGGA
TTTAGTTTCTCCCCTAGTTTTGAATCTCAAAGCAAGCAGAATGATACTAAAGATGGTGAGATTT
CTTCTTCAGCTGGTATAAATATTGGTTCTGGCGGAATGTCCTGGGCTTTTAAGGACGCAACTTT
TGGACATGAATCAAAGGCTAAGGAAGAGCCAAGGGTTGCTGATGCTTCCTCATCTGCGGTTGAA
GGTTTTTCATTTGACGGTCATATCCAGGGGAATGAGGAAACTTCAAAGAAAAACAAAGCAGCAT
TGCCCCTGTCCATCTTTGGTGATGAAGAAATTGAAACTGAGGATCCATTGAAACATGAAGATGT
TTCCATTCTTAAACCAACCACTACAAATGCTGGCTTGAAGGATACTCGTTCAAATATATCCATC
AATGATCTTATATCAAGTTTATATAGCCAATCTGAGACAAATACTTCTTTAAATCCAATCAGCA
ATCCAAGTGAAAATGGACTTCTTTCCTCTCAGATAGATGTGGGTTCCAGTTTAGTAAATGGTGA
TAGTTTTGATGACGACTCCTGGGAATTTAAAGGTGCCGTTTCTGGAACTGGAGGAGAAAACCAG
AATTCTTCATTCAGTTTTGGAGATTCATATGAAAAATACACTATCAAAACGGAGCTAAATGATT
ATCTGGACTTGTATTCTAAATTGACCACTGAATTGTGCTTTGTTGCACTTAGCCATCTTGAGAA
TATGAAGAAAGATAAAAGTACTGCTGCTCCTTCTGGTGAAGATGCTGAAGTAAAAGCTATTGAG
GAGGAAATCCTG

Genomic sequence AGTAATCCAAATGTGCGAATGTCGAATTGCAATATGTCTACTTCGAGTTGGGATCCATTGGGTA
CAAATACCAGTGTGCTGAGTTCAAATATTAATGGGGTAAACGCAAATGCAAGTAGGTTGGACTC
TAATTTAGTTGATGAAAATGATAAGACTAGTGTTGATGATGATGATGATGATGATGATGATGAT
GGATGGGAATTCAAGGCTGCAGAGCCCGAGACTCGCTTCACAACCGGTGATGCTAAGGTAAAAG
TTTAACTTCTTTTTTTTTTTGTCATTTCGATAAGCCAGCAAATCCTTGTTAACCAGATATCCAC
AAAACTGTTCTGTAAGTTCTTTTACTTTTTGTTAGTGGTGATAGTTTGTTGTTACTAGTGTGTA
GGATGTATAATTTTTGCATGTGGCTCTTGTTTATACATAAAGGCAATCCTTTTGTATTTCAAGT
TTGATTAATACATATATTTTCATCAATTGATAAGTTGTTCAGGGACTTTATTTTGTTCACTGCT
GCTCACATTTACTACTTTAAAGGTTGAGGACCAGGATCGGGAAAAACCTCAGGGAGCTGAATTC
AGCTTTGGGTTTGGGCATGGCGCAAATGGTTCTAGTGATTTCTTTGGCACATCAGATGGAATAT
CTAAGAAACCTGGTGAATGGGACTTAGGATTTAGTTTCTCCCCTAGTTTTGAATCTCAAAGCAA
GCAGAATGATACTAAAGATGGTGAGATTTCTTCTTCAGCTGGTATAAATATTGGTTCTGGCGGA
ATGTCCTGGGCTTTTAAGGACGCAACTTTTGGACATGAATCAAAGGCTAAGGTGATGAATTGAT
TGATATATGTTCATTCTTTTTTTCTCTTTTTATATCACAATCAATTTGCCTTATCAAGCTCAAT
GTTTTTACACTTATATCCATAGGAAGAGCCAAGGGTTGCTGATGCTTCCTCATCTGCGGTTGAA
GGTTTTTCATTTGACGGTCATATCCAGGTATTAGATCATTTTGCTGCTTGAGAAAAATATCGTT
AAAAAAAAAAAAAGAAAAACTTGATGGGGCTTTGGTGGATCGGATATGTTGTGCTAAGCTTCTA
TAAATTGAGCTCATGTTAAGCATCAAATGCCTGTTGCATAAGACATACCTCTTCATCTAACAAA
TTGTATTTTGTTTGTCATTTGAGAGAAAAGTTACTAGTGGTACACATTGGAAAATTTTCTTCTT
TTGTTCACTGTTCATCTTCCCTTTAATGTGTGTAGGGGAATGAGGAAACTTCAAAGAAAAACAA
AGCAGCATTGCCCCTGTCCATCTTTGGTGATGAAGAAATTGAAACTGAGGATCCATTGAAACAT
GAAGATGTTTCCATTCTTAAACCAACCACTACAAATGCTGGCTTGAAGGATACTCGTTCAAATA
TATCCATCAATGATCTTATATCAAGTTTATATAGCCAATCTGAGACAAATACTTCTTTAAATCC
AATCAGCAATCCAAGTGAAAATGGACTTCTTTCCTCTCAGATAGATGTGGGTTCCAGTTTAGTA
AATGGTGATAGTTTTGATGACGACTCCTGGGAATTTAAAGGTGCCGTTTCTGGAACTGGAGGAG
AAAACCAGAATTCTTCATTCAGTTTTGGAGATTCATATGAAAAATACACTATCAAAACGGAGCT
AAATGATTATCTGGACTTGTATTCTAAATTGACCACTGAATTGTGCTTTGTTGCACTTAGCCAT
CTTGAGAATATGAAGGTTGGTAGAGTCATTTAATTTCATTTCTTCTCGTCTCCTTTTTGTTGAT
ATCAATGTTTTTAAAAGTATTTTGTTTCTGAAATATGCTTTTAATTAGAAAGATAAAAGTACTG
CTGCTCCTTCTGGTGAAGATGCTGAAGTAAAAGCTATTGAGGAGGAAATCCTG
Conservation Information
Conserved circRNAs ghi_circ_000401*
PMCS 0.937781159
Functional Information
Coding potential Y
Potential coding position 50681921-50683808(+)
Potential amino acid sequence MSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDDDDDDDDGWEFKA
AEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKPGEWDLGFSFSPS
FESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADASSSAVEGFSFDG
HIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDTRSNISINDLISS
LYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSGTGGENQNSSFSF
GDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDAEVKAIEEEILSN
PNVRMSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDDDDDDDDGW
EFKAAEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKPGEWDLGFS
FSPSFESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADASSSAVEGF
SFDGHIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDTRSNISIND
LISSLYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSGTGGENQNS
SFSFGDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDAEVKAIEEE
ILSNPNVRMSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDDDDDD
DDGWEFKAAEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKPGEWD
LGFSFSPSFESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADASSSA
VEGFSFDGHIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDTRSNI
SINDLISSLYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSGTGGE
NQNSSFSFGDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDAEVKA
IEEEILSNPNVRMSNCNMSTSSWDPLGTNTSVLSSNINGVNANASRLDSNLVDENDKTSVDDDD
DDDDDDGWEFKAAEPETRFTTGDAKVEDQDREKPQGAEFSFGFGHGANGSSDFFGTSDGISKKP
GEWDLGFSFSPSFESQSKQNDTKDGEISSSAGINIGSGGMSWAFKDATFGHESKAKEEPRVADA
SSSAVEGFSFDGHIQGNEETSKKNKAALPLSIFGDEEIETEDPLKHEDVSILKPTTTNAGLKDT
RSNISINDLISSLYSQSETNTSLNPISNPSENGLLSSQIDVGSSLVNGDSFDDDSWEFKGAVSG
TGGENQNSSFSFGDSYEKYTIKTELNDYLDLYSKLTTELCFVALSHLENMKKDKSTAAPSGEDA
EVKAIEEEIL(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b