Detail information of Os02g0702500_circ_g.4


General Information
CircRNA Name Os02g0702500_circ_g.4
ID in PlantcircBase osa_circ_016122
Alias NA
Organism Oryza sativa
Position chr2: 28941563-28944593  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0702500
Parent gene annotation Similar to B0403H10-OSIGBa0105A11.22 protein. (Os02t0702500-01);
Similar to B0403H10-OSIGBa0105A11.22 protein. (Os02t0702500-02);
Hypothetical conserved gene. (Os02t0702500-03);Conserved hypothe
tical protein. (Os02t0702500-04)
Parent gene strand -
Alternative splicing Os02g0702500_circ_g.3 Os02g0702500_circ_g.5 Os02g0702500_circ_g.6 Os02g0702500_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0702500-03:2
Os02t0702500-01:7
Os02t0702500-04:2
Os02t0702500-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCATTCTGCATTTCAATACCAGGATAAATACTTCCAACTTGCTTAAAAAATCTCCCAGTATTT
TTAGCCTCCCGTAGCAGATCATCTGGTGGTTGTCCActttgattcatggataaagagtttgagt
ttgcaatagcatggctttggatatgggccaatctgctggattggtttgtttgaccacttgcatc
cttcaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGATTCATGGATAAAGAGTTTGAGTTTGCAATAGCATGGCTTTGGATATGGGCCAATCTGC
TGGATTGGTTTGTTTGACCACTTGCATCCTTCAGGTGGAGATCGCTCAACGCATCTGATAGTGA
AGTGTCCTCTTGCAGAAGTGACTCTTCGCTGCACATCAAAACAAAGTGAAAAAGATCAACACAT
GTTACATTACAAAGACAAAACTGTATGATGCACTGTTACCTATAGTTTGGATCCCAATCAGCTG
GATCCGGTATTGATGAGGTGGAAGCCAGTGTATCTGCTGACACATTGGATGAGTGCGTAGGAGG
AAAACCACCGTATCGAGATGGTGGAAAGGACCCATGGTTCGAAGTGTCTGTTGATAAACCACTG
CCAGCGCATGTATGTGGTCTCCAACTGAAATGACCAGGATTAGGGAGTGCACTTTGTGGGTAAC
CAGAATGTCCACGAGCATAGCCATCAAAGTGATTACTAATGGTGCCATCCCCATGGTGTCCCTG
AGTCAGCTGAGATGTGTATTCATGAGGCGGCATTGATATAGGTGGGTGACCAAGATTTCTTCTT
CTATTGTATTGGCCTACAGCAGCAGCTTTTCCCAATGAGCCATGACTGCTCCTTGCAGGAGAAG
TGGAACCATACTTTCCTGTAGCAGTACTTGGGATTTGCATCTGAGAATTTGGTGGAGTAAATTG
TGATGGACTTGCCCCAAGAGACATAGGCCCTGGACACCCAGGGCTTAATCGAATGCCACCACCA
TGATAGAGATAAGATCGTCGTCTAATATCTGGACTAGATCCCAAAAATGTTCCTCCGGCTTGTG
AATGTAAATTGAATCCAGAAGGGCCTAGTGGTGAATGATACATGTTCACACTGTTGACATCATA
GCTTCCATAGCTGCTTGCAAGACCTACATTGTCATTAAAGCTACCATGGCTACCGAAGCTGCCA
CAGCTGCTTCCATATGAAAAGGGAATCTTTGGTGCAAAAGCGTTATTAAATGGTAGGCCTCTGT
TAATGCTTCCAACCTACAAACATAATCAACAATATATTATGATAATAATTATCTTACAACTCAC
CAACTTAACAAAAGCATAAGAGAACATACTTACAACCTGAGGGGAAAGACCAGCAGCTAACCAG
TGACCTCCTCCAGGATTATGATCAACTGCTGCAACACGACCAACAGGCTACAATGGCACAACAC
AACAAGACATAAGTATATGACTTACGGACTACTTGTATGAAAAAAAGGGAGCGCTTAAGGTACA
AGTATTTTAAGGTTTCTCCACATTGTCTACTCCCTCTGATTTCAGATATGTCACCATTGACTAG
TGCAATTATAATTTTGACCACAACAAATTTTGAATGGTGGAGCATGACGCACAAAAGTTTTGTG
ATATTTAGGGTGCAACACACTTCGTTAATATGACATACTTTTAAGTATTTGTTTTTTTCAAAAA
AGACGAGCTGTCAAAGTTTGAAGATGAATAGTACCTAGTGACAAGTATTTGAAGACAGAGGGAG
TAGTATATAGCAATATATAGTCTGTTGGTGGGAAGAAACACTGTTTCATGTATCCATGTTTGTT
ATAATGTGAAAGGAAGATATCTAAATACCTCGTTCAATTAAATGCAGAGCAAAACCAAAGTCAA
TTGTTACAAATGATGGTCGTTCCGTATCAACAGTCTCTAAGGAGAGAAAAATTATACAGCAGGT
TGTCTGGAAACAAGATCATACTTACAATTCTTGGAGTCTCCTGGATAGGCTCATATGGACCAGT
AAACGCTTCACCAGTTATGAAGGGATGATATGAAGCCTGAAATAGGTTCATAATTGTGAAGTAC
TTCCATTGATTATTCAAGAAGAAAAAAAAATAGCGCAATAGGAAATCAAGTTAATAATTTCCTA
AGTACCAAACTGACCTGCCTAAAGCTCATTTATTTAACGGCTACGAAACAAGGATTCCCCAGCA
TATTCAGATATTGGGATTAATAAGACTTCCCATTCACAATCAAAGAGTACAACCAAATAGGAAT
CAAATGTTATCATCAGTGAATACCTGCAATGGTGACCACCGCTTATTAGGATCAAACTCAACAA
GCCCTCTCAAGAAATCAACCAGTGCTAAGCGATCTGTCTTTTCTGTCTCTGAATCAAAATTGAA
ATAGGTGAGAAGATAATGTCAAACCTGCAACTTCATCATAAGGACTAGGATATTATCATTCAAG
AGACTAATACTAAGAAATAATTCTAAGTTCACCAGTATTATTAGTATCTTGCATGATTCTGGTA
TGTGCCAGCATTGCTAACCTATTGTTCATACACCTGTTTAATAAAGAACTGCAACCGGAAATAA
GGTATAGTTAACTAGGTTGATCATTTCCCAAAAGGTACCGCTATAGTATGCAACACTATCAGTT
CTATAACAACTACTGCAACTTCCTGGGCACCCATTATAATTTATGCCACAGTATAGTCGTACAC
CAAAGGCAATAAACCTTAAGGCAATGCACACCAAATGAACCACGTATTCCGCAAGAAACGCTAA
TTACTGGGTCTGCCATATTGATCACTGCTAGCTGAGATTGTTCTAGAATAAACACAGTTTCAAA
ATCAGCTGTAAACCTACTTAGCTCCATCCTTAAAAATAAGTATCACAAAACATACCTGGCAAGT
TTTCCCCATTCAAATTCTTCCAAGGGTATGTATATATGAGTTTGTCAAGCCTTCCACGAGGGAA
ATACCATCTTCCTACTTTTGGTTTTTTGGACTCCCTCTGTGTTGCAGGATGTAAACAGGGTATA
GATAAGTAATAATGAAGTAAATGTATAGGACAGGACAAATATGTAACCTTAAAAAAAATAAAAA
TATTACAGTTTCAATCTCCTCTTCAGTTAATATTCTGTACGCACTGATAGGGCCATTCTGCATT
TCAATACCAGGATAAATACTTCCAACTTGCTTAAAAAATCTCCCAGTATTTTTAGCCTCCCGTA
GCAGATCATCTGGTGGTTGTCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.139286204
Functional Information
Coding potential Y
Potential coding position 28944507-28941565(-)
Potential amino acid sequence MQNGPISAYRILTEEEIETRESKKPKVGRWYFPRGRLDKLIYTYPWKNLNGENLPETEKTDRLA
LVDFLRGLVEFDPNKRWSPLQASYHPFITGEAFTGPYEPIQETPRIPVGRVAAVDHNPGGGHWL
AAGLSPQVGSINRGLPFNNAFAPKIPFSYGSSCGSFGSHGSFNDNVGLASSYGSYDVNSVNMYH
SPLGPSGFNLHSQAGGTFLGSSPDIRRRSYLYHGGGIRLSPGCPGPMSLGASPSQFTPPNSQMQ
IPSTATGKYGSTSPARSSHGSLGKAAAVGQYNRRRNLGHPPISMPPHEYTSQLTQGHHGDGTIS
NHFDGYARGHSGYPQSALPNPGHFSWRPHTCAGSGLSTDTSNHGSFPPSRYGGFPPTHSSNVSA
DTLASTSSIPDPADWDPNYSEESLLQEDTSLSDALSDLHLKDASGQTNQSSRLAHIQSHAIANS
NSLSMNQSGQPPDDLLREAKNTGRFFKQVGSIYPGIEMQNGPISAYRILTEEEIETRESKKPKV
GRWYFPRGRLDKLIYTYPWKNLNGENLPETEKTDRLALVDFLRGLVEFDPNKRWSPLQASYHPF
ITGEAFTGPYEPIQETPRIPVGRVAAVDHNPGGGHWLAAGLSPQVGSINRGLPFNNAFAPKIPF
SYGSSCGSFGSHGSFNDNVGLASSYGSYDVNSVNMYHSPLGPSGFNLHSQAGGTFLGSSPDIRR
RSYLYHGGGIRLSPGCPGPMSLGASPSQFTPPNSQMQIPSTATGKYGSTSPARSSHGSLGKAAA
VGQYNRRRNLGHPPISMPPHEYTSQLTQGHHGDGTISNHFDGYARGHSGYPQSALPNPGHFSWR
PHTCAGSGLSTDTSNHGSFPPSRYGGFPPTHSSNVSADTLASTSSIPDPADWDPNYSEESLLQE
DTSLSDALSDLHLKDASGQTNQSSRLAHIQSHAIANSNSLSMNQSGQPPDDLLREAKNTGRFFK
QVGSIYPGIEMQNGPISAYRILTEEEIETRESKKPKVGRWYFPRGRLDKLIYTYPWKNLNGENL
PETEKTDRLALVDFLRGLVEFDPNKRWSPLQASYHPFITGEAFTGPYEPIQETPRIPVGRVAAV
DHNPGGGHWLAAGLSPQVGSINRGLPFNNAFAPKIPFSYGSSCGSFGSHGSFNDNVGLASSYGS
YDVNSVNMYHSPLGPSGFNLHSQAGGTFLGSSPDIRRRSYLYHGGGIRLSPGCPGPMSLGASPS
QFTPPNSQMQIPSTATGKYGSTSPARSSHGSLGKAAAVGQYNRRRNLGHPPISMPPHEYTSQLT
QGHHGDGTISNHFDGYARGHSGYPQSALPNPGHFSWRPHTCAGSGLSTDTSNHGSFPPSRYGGF
PPTHSSNVSADTLASTSSIPDPADWDPNYSEESLLQEDTSLSDALSDLHLKDASGQTNQSSRLA
HIQSHAIANSNSLSMNQSGQPPDDLLREAKNTGRFFKQVGSIYPGIEMQNGPISAYRILTEEEI
ETRESKKPKVGRWYFPRGRLDKLIYTYPWKNLNGENLPETEKTDRLALVDFLRGLVEFDPNKRW
SPLQASYHPFITGEAFTGPYEPIQETPRIPVGRVAAVDHNPGGGHWLAAGLSPQVGSINRGLPF
NNAFAPKIPFSYGSSCGSFGSHGSFNDNVGLASSYGSYDVNSVNMYHSPLGPSGFNLHSQAGGT
FLGSSPDIRRRSYLYHGGGIRLSPGCPGPMSLGASPSQFTPPNSQMQIPSTATGKYGSTSPARS
SHGSLGKAAAVGQYNRRRNLGHPPISMPPHEYTSQLTQGHHGDGTISNHFDGYARGHSGYPQSA
LPNPGHFSWRPHTCAGSGLSTDTSNHGSFPPSRYGGFPPTHSSNVSADTLASTSSIPDPADWDP
NYSEESLLQEDTSLSDALSDLHLKDASGQTNQSSRLAHIQSHAIANSNSLSMNQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017