Detail information of BGIOSGA001642_circ_ig.1


General Information
CircRNA Name BGIOSGA001642_circ_ig.1
ID in PlantcircBase osi_circ_009438
Alias Chr01:15668146_15670923(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 16607518-16610294  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGATAAACTTGCAGCTCATTACCTCATAATGAATTTGATTGATAATATGATCTGGTCGTGTGT
CCAAAGTTCCTTTCCTCAACCAAAAAAAATGAGCACcatagcagaacaagatatacagtattta
cgtcttttaaaaaaaacgcaatggaaacaaaacaaaataactggttcacaacgtgttgctgttc
atttagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATAGCAGAACAAGATATACAGTATTTACGTCTTTTAAAAAAAACGCAATGGAAACAAAACAAA
ATAACTGGTTCACAACGTGTTGCTGTTCATTTAGAGTTGAAGATTTTTGCAAGCATACACAAGC
ATGTCAACTGTCAAGACCAAGGAATTCTGTGAAGCTTGGATACTTGGGCTCCCAACCAATCTCA
GAACGAGTTCTCGAATTCTCCATCTTCTTACCCAGTGGACCATCTGTACCTGCAGTTAAGGCAG
AATGAAGATTATGCAATAGATGCGAATGCCTGTGGAGTAAAATATAAGCATAAATGAACATGTA
GAATACTAACCAGTAAAACCTTGGAACTTCGTGTCAAATTTTCCACTTCTGTTAACAGAGTCCA
TTATTTCTTGCCTGAAAAGTTGAAGTAAATTTTGTTTCAGTTGACAGACCCGTTCAGCTATTAG
TGCAGTCATGATACACAGCTCAGTGGACGTAGGAAACAAATAATTAGTCAAAACAAGTAGCCTA
GCACTGACCTGGAAAGAGGCTTATTGTCACAGCCCAAAAAGATTCGACCCCTGTGTCCCTTTTT
CATTATGGCAATTGCAAGGGAAGCAGCATCCTGCAAATAATTACCACAAAGAATTACACCAATA
CTAACAGCTAATTAAACAGCCATCATAGCCACCCCATGCAATGAACATGAAAAAGCCCATGGGG
AAACACGATGATATAAAGACCCCGTATGGCACAGCTCCAGCTCCCGCTCCCACTTACCTAGAGC
TAGAGCTGTGCCAAAGTACAGATTCTCTATTTTTTGGAGCAGAGTTGGCAAGGCTGCTCCACAA
ATTTGTAATACGGGGGTGGAGCTGGGTTTTTGCTGCTCCACAGCTCCACTCCACCCCAAAAGAC
CCACTACCCTTTAATTTTTTTGATGTATTACCAAAAAAAAATGCCACTAAACTACCCCTAAACT
CCTCACATTCTCTCTCCTCCCATCCTCCCATCATCTCTAGTGAGATCCGGCGGCAACCGGCAGC
GGGCAGGCTGGCGGAGGCGGCGCACGGCCTCGATGGCGGCGCGCGGGCTAGCGGCAGCACGCGG
CCTCGGCGGCGGCGCGAGGGCTGGCCGACGGCGCGGGGGCTGGGTGCCGGGCGATGGCGCGCGG
GCTGGCGGCATCGACGGCGGTGGACACGAGCGGCGGGCAGCAGCAGCATGGGCTGGGTGGTGGC
AGCGCACGGGGTGACCAGTGGCGGTGCCGGTGGCGGGCGTCGGCGGTGGTGGTGCACAAGCTGA
CGGTGGGGCGACGCCAACCAAGTGTTCGACGAAATGACTACAAGGGACGTGGTGGTGTGAAGCT
AACAAGTCTAGCCAAACACTTTCACAACCACCCTAGCTCCTATAGGAGCTAGCTCCCACTGGAG
TTGGAGTTTGGAGCTCTACCAAACGGGGCCAAAGAAGACAATTGGTCAAACAGATCCCTAGGCC
CTTTAGATATGCCATAAACATCAGACCTTCGAATTTTGAAATTTTATCTCTCCCAAAACAAGTG
CAAAACTGTTGTTTCCTGCAGAGAAATATTGCTTACAGTTTTGCGTCATTCCAGTTTTTTCTTA
AAAAAAGAAAAGAAAACTGCTATTGAAAAGATAACAAGTTGTGTCTTTAATTCAATGACCATGG
GCTGGAAACTGTTTGTAAAAATACATTTTGTTATTTTTCACGTTAACCCAAATGCTCAATAGAT
ATTTCTAACTAAATTATATTGGACATATTGACTCTTTTGCTTGAAATATAGCTGAAATGCCACA
CCAGCTCTGTTGTTTTGCTCCCTAGAATAAACTAACCTTCCTCCAAGTCACGTGCAATCTAAAA
AATGGACTATCAATATCACGATGTTCCCATTTTTTTTATTAATGTGGGATAATGATTATTTCTG
ATTAATGTAGGACTCTTTGCCTAGCTTGTTTCTAGGACCAAGCAAGTGACTCTTGGGAGATATC
CAATTACTATATACTCCCTCCGTTTCTTGACACCGTTGAATTTTTAGCACATATTTGACCGTTC
GTCTTATTCAAAAACTTTTGTGAAATATGTAAAACTATATGTATACATAAAAGCATATTGAACA
ATGAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACAGTCA
AACATATTTAAAAAAATCAACGGCGTCAAATATTTAGAAATGGAGGGAGTATAATCTAAAATGT
TATGTGAGAACAGTATTTCTTTTCTTCGATATTTTGGGTAGTTTACAGCTATTTGTATTAGGAT
AATGTAGTGATAACTACATATTTAGGAGTATATATAAGGTCATGGAAACCCCTCATGAGTTCAT
AAAACCAGAGATCGAAATATACAATAGAAAGCAACCAAAACATAAGATATAGAATAGTAGGTTG
AAAAGTTCTTTCCTAGATTACAATAATAAGATATATTGCAACTTAATTTAGACTGTCGAATGTA
TCTCAACGCACTATAAATTATAAAATGGAATTGCATATGCTTTTATACAATCAAACAAGTTAGA
TCTAAATTATAAAAAGTACCAACTATGTATGGTAAGTAAACCCAAGTTCCACAGTTGTGATCAC
AATGCAAATGATACGACAGATAAAGAAAGAACAGCATAACAAGACATATAACTGAGATAAACTT
GCAGCTCATTACCTCATAATGAATTTGATTGATAATATGATCTGGTCGTGTGTCCAAAGTTCCT
TTCCTCAACCAAAAAAAATGAGCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021