Detail information of Os06g0562600_circ_g.2


General Information
CircRNA Name Os06g0562600_circ_g.2
ID in PlantcircBase osa_circ_031159
Alias Os_ciR5512
Organism Oryza sativa
Position chr6: 21599081-21601823  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os06g0562600
Parent gene annotation Similar to T-complex protein 1, epsilon subunit (TCP-1-epsilon)
(CCT-epsilon) (TCP-K36). (Os06t0562600-01)
Parent gene strand -
Alternative splicing Os06g0562600_circ_g.1 Os06g0562600_circ_g.3 Os06g0562600_circ_g.4 Os06g0562600_circ_g.5 Os06g0562600_circ_g.6 Os06g0562600_circ_g.7 Os06g0562600_circ_g.8
Support reads 3/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0562600-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCCAATCTCGTAGTCTTGACTGCAGGACAGCTCCACCATCAGCTTCGCGATTTGGTTGTCCA
CATCCATTTGCTCCAGGATCGTTGCGCCATCATTTGctttacttgttgagattttactgctgtc
agtgtatcaataggagacaaaccactgttttcggccaaggctagtggaatagcatccaacgcat
cagcaaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1238
Transcript exons: 21599081-21599194,21599267-21599433,21599871-21599973,21
600135-21600187,21600258-21600390,21600655-21601003,2160
1505-21601823
CTTTACTTGTTGAGATTTTACTGCTGTCAGTGTATCAATAGGAGACAAACCACTGTTTTCGGCC
AAGGCTAGTGGAATAGCATCCAACGCATCAGCAAATGACCTGATTGCATACTGTTCAACTCCTG
GGTACCGATCTGCAGCAGCTTCAACAGCAACTGAGCAAGATATTTCTGCTGAACCACCACCATA
CACAATTGAATTATTACGGATAAGATTCCTTGCAACACAAAGAGCATCATGAAGACTTCGCTTG
GTCTCCTCAATCATCATTTTGTTGCCACCACGTATGAAGATAGTTACAGCTCTGGAGTTGGCAC
ACTGTTCAATGTAAAGCATGCGATCTTTTGTTGTTCCAAATGATTTCTCTCTGACTATTCCAGC
CTTCCCAAGCTTTTCAGGACTCAACTCTTGGAACCTCGGAACAATCCGCCCTCCTGTAGCAATG
GCAATCAATTCTAATTCAACACCACCAACCCATCTGACAGCTGGCAAATTTCTATGCATCAGCA
GATGATTGGCTTCATCATCAAAGCCCCATTGGCAAATAACTAGGGTTGCTCCAACATCCTTGCA
TTTCTGAACCATTTCATCAAAGTATTTTTGCTCTTGCTCACGCAGCATCTGGAACTTCTCTACA
GTATCAATGTCAACCTTATGCTTTGTCTTAGGCTTCGGGGGCTCAAATGGGCAGGTCAGGATGG
CAATCTTAGCATCCTCAATCCTCTTTGGCATTTGAGGGTGGCTCATATCTTTGTCGACAATGAT
TCCATATACTAGCTCAGTATCCTCTAGTTTCCCGCCTACCTTACCTTCCACTTTGATCAAGTCC
AAGTTTACATCCTTCCTTTCCAAATCAGCCACAGCAAGGACCGCTTTCACAGCAATCTCAGCAA
GAGTCCTCTTACAACGGTTAACAATTTTCGATGACAGGGTTGTCATGCAGGTCTGCACCAGAGG
CTCTATATTGGTAGCACTAAACTCAAACTTGTGGGAGATGTGCTCAAGGTGATCAAAAGCTATC
CTTGAGGCCAACTCATAACCTTCGGCGATCCTTATGGGGTGAATGCCGCGTTCCAGCAGTTTCT
CGGCTTGCTCCAGGAGAGAGCCAGCCATGACCACAACACCAGTGGTACCATCCCCAATCTCGTA
GTCTTGACTGCAGGACAGCTCCACCATCAGCTTCGCGATTTGGTTGTCCACATCCATTTGCTCC
AGGATCGTTGCGCCATCATTTG

Genomic sequence CTTTACTTGTTGAGATTTTACTGCTGTCAGTGTATCAATAGGAGACAAACCACTGTTTTCGGCC
AAGGCTAGTGGAATAGCATCCAACGCATCAGCAAATGACCTGATTGCATACTGCAAATAAAAAA
GATAGAATCAGAGGATACATATAGGATGTGTTTGTATAGCTCGCACGCCAGTAATTACCTGTTC
AACTCCTGGGTACCGATCTGCAGCAGCTTCAACAGCAACTGAGCAAGATATTTCTGCTGAACCA
CCACCATACACAATTGAATTATTACGGATAAGATTCCTTGCAACACAAAGAGCATCATGAAGAC
TTCGCTTGGTCTCCTCAATCATCATTTTGTTGCCTGCAAAGTAGATAGTTTCATCATCGCACAA
GCTCCAAGCAAAGGTTATTTTTAAGAAGAGATTATTGATTTTCTACTTGATTGAGATTGAAAAG
TAGATGCTGAGCACAACCATGCATTGTGATCCATACTGCTTTGCTGCCTTTTTAAATTTTATCT
AAAGTTGTCTCAGATGATGTTGATATTATGATGCAGTTGATATTTAATATCGATTTTACAAACC
TACTCCTACCTATGAAGTATGCAAACAAGTACTGTCAAAAATAGTATTTTAGTAAGACCCAGTT
GCTATTTTAGTTTATTGCCCTAAACATATGAAATATTTGTGGCATATGTATTTGATACCACATA
TGGTATAATGTAATGTAGGCTTTAAATGCACAATTACTATATTCAATTATATCAGTCACTCTCC
TTTGGCAATTGAAATAACATACCACCACGTATGAAGATAGTTACAGCTCTGGAGTTGGCACACT
GTTCAATGTAAAGCATGCGATCTTTTGTTGTTCCAAATGATTTCTCTCTGACTATTCCAGCCTG
TATAGGAAAAGTAAGCACAAAAGAAAATATCATAAGACAAGTTCAGAATGGTGCCAACATGAAT
CCCCATAATGGATAACTTAAACACTTTTCACACCAACAAAGATAAAAAAACACACATATTTCTT
GATTCTCATCAGTGGAGAGAGTATGTTTACCTTCCCAAGCTTTTCAGGACTCAACTCTTGGAAC
CTCGGAACAATCCGCCCTCCTGCAGTCAGTGTTTATATGTTATGCACTGTATGTACAAGTCAAT
CAAATTCTCATGGAGGTATGGATACCTGTAGCAATGGCAATCAATTCTAATTCAACACCACCAA
CCCATCTGACAGCTGGCAAATTTCTATGCATCAGCAGATGATTGGCTTCATCATCAAAGCCCCA
TTGGCAAATAACTAGGGTTGCTCCAACATCCTACAAAATTATAAATATACGTAATTAATTAGCA
AGCACACACACAACATGATATGGAGCAAAGTGAAACCCAATACATTCACTTTATGGTAGTTTGG
TACTTAGGGAAATATGAAGGGAAAAGATGAGAGTTAACTTGACAAGTCACATCAGGATCAATTA
AATAAATGTGCAACCATGAAATATTAACCAAGGAAACAAAAAAAATACAACTATTGAAAAATGT
AGAGAATAATGTATGTAAATATGCAACCATGATCCTACCTTGCATTTCTGAACCATTTCATCAA
AGTATTTTTGCTCTTGCTCACGCAGCATCTGGAACTTCTCTACAGTATCAATGTCAACCTTATG
CTTTGTCTTAGGCTTCGGGGGCTCAAATGGGCAGGTCAGGATGGCAATCTTAGCATCCTCAATC
CTCTTTGGCATTTGAGGGTGGCTCATATCTTTGTCGACAATGATTCCATATACTAGCTCAGTAT
CCTCTAGTTTCCCGCCTACCTTACCTTCCACTTTGATCAAGTCCAAGTTTACATCCTTCCTTTC
CAAATCAGCCACAGCAAGGACCGCTTTCACAGCAATCTCAGCAAGAGTCCTCTTACAACGGTTA
ACACTGCAGAATAAGAGTAAGAAAGATCAACAAGCTGTTATAGTCACTGTGAATCTGACCTAAG
AAAGATACTTCTAAAGCTCTAGCATATAAATTTAGAGGCAGATCAAAAAGTCTCCTACAAACAC
CTTCCATGCTTGAAGTGGAACCACAGGTTTGGTATTGTTATGACAAGTATATTTCTTAGGAGTA
GATCTGCTTTGAAGACGGAAATGAGTTCAAGTGGCAGTAATATAGATGCACTACAAATGACAGT
GTGAGAATTAGTGGAATCTTTTACTCTTATTATGCCAAGGCAGTTAGGGAAGAAAAAGGGGAAA
AGATCCAAGGAAAACCATTGCACTACCTAAAAAAGTGGCAAAGGCATAACAATTCTTTGCAACA
GCATACTACTTGGAAAAAAAGGTCAATATACTTAGTTCGAAAAAGAAACAAGAAAAGAAAATCG
TGTGGCCTTCTGAACAGTTCAAGACTAGCTAAAATTATATTTATCTTATGACTTACATTTTCGA
TGACAGGGTTGTCATGCAGGTCTGCACCAGAGGCTCTATATTGGTAGCACTAAACTCAAACTTG
TGGGAGATGTGCTCAAGGTGATCAAAAGCTATCCTTGAGGCCAACTCATAACCTTCGGCGATCC
TTATGGGGTGAATGCCGCGTTCCAGCAGTTTCTCGGCTTGCTCCAGGAGAGAGCCAGCCATGAC
CACAACACCAGTGGTACCATCCCCAATCTCGTAGTCTTGACTGCAGGACAGCTCCACCATCAGC
TTCGCGATTTGGTTGTCCACATCCATTTGCTCCAGGATCGTTGCGCCATCATTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.378334579
Functional Information
Coding potential Y
Potential coding position 21601796-21601766(-)
Potential amino acid sequence MDVDNQIAKLMVELSCSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYELASRIA
FDHLEHISHKFEFSATNIEPLVQTCMTTLSSKIVNRCKRTLAEIAVKAVLAVADLERKDVNLDL
IKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKRIEDAKIAILTCPFEPPKPKTKHKVDIDTVE
KFQMLREQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIA
TGGRIVPRFQELSPEKLGKAGIVREKSFGTTKDRMLYIEQCANSRAVTIFIRGGNKMMIEETKR
SLHDALCVARNLIRNNSIVYGGGSAEISCSVAVEAAADRYPGVEQYAIRSFADALDAIPLALAE
NSGLSPIDTLTAVKSQQVKQMMAQRSWSKWMWTTKSRS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017