Detail information of Zm00001d009763_circ_g.1


General Information
CircRNA Name Zm00001d009763_circ_g.1
ID in PlantcircBase zma_circ_005654
Alias control_test_circ_001900
Organism Zea mays
Position chr8: 80088217-80088270  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d009763
Parent gene annotation calcium exchanger1
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered Zm00001d009763_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCGCAGTCTACATACTTTAGTCAAAcattcacacatcagctgaacagcatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTCACACATCAGCTGAACAGCATCTTCCCGCAGTCTACATACTTTAGTCAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.114197531
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018