Detail information of Zm00001d014792_circ_g.2


General Information
CircRNA Name Zm00001d014792_circ_g.2
ID in PlantcircBase zma_circ_004869
Alias heat_test_circ_001240
Organism Zea mays
Position chr5: 63349275-63349332  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d014792
Parent gene annotation shepherd-like1
Parent gene strand -
Alternative splicing Zm00001d014792_circ_g.1
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered Zm00001d014792_T007:1
Zm00001d014792_T006:1
Zm00001d014792_T001:1
Zm00001d014792_T004:1
Zm00001d014792_T005:1
Zm00001d014792_T003:1
Zm00001d014792_T002:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGGCCTTCTTCCACCACTCCGTCAGCTCccttcaccgagtccacgctctcgctctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCACCGAGTCCACGCTCTCGCTCTCCAGGGCCTTCTTCCACCACTCCGTCAGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.454022989
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018