Detail information of Zm00001d015974_circ_g.2


General Information
CircRNA Name Zm00001d015974_circ_g.2
ID in PlantcircBase zma_circ_008664
Alias zma_circ_0001875
Organism Zea mays
Position chr5: 135680425-135685246  JBrowse»
Reference genome AGPv4.38
Type   i-circRNA
Identification method find_circ
Parent gene Zm00001d015974
Parent gene annotation Leucine Rich Repeat family protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGGAGAGGATCGTCGGGATCGTGATACCAGGTTGTCAAGTGTCTCGGCTCCCAGAGTCGCTG
GACCGTGACTACATAGCTCGTAGTCGCGCTCCAGACctcaccacgaagttatacccttctgttg
gtggcttgagatcggtagggagaagaagactatgggtaaattcttgttgttcttctccagtcgg
ctggcaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCACCACGAAGTTATACCCTTCTGTTGGTGGCTTGAGATCGGTAGGGAGAAGAAGACTATGGG
TAAATTCTTGTTGTTCTTCTCCAGTCGGCTGGCACAGGCTTTTATAGCCAAATGGCCAACCACC
AGGAGGGAAACTACTCCCTGATTATAGTAATAGCAATCCTACTTTCCTTCTTATCCCTACTGCA
GAAGGAAACCTCTTTATTCTAGGAAAGGGATATCCTACTTCCCTTCTTAGCCCCTGGCTACTTT
CCTATTTAGCCGATGTCAATCACTTTATTCTAGGACTGCTTTCCCTCTGCGCTGCTGCCTTCTG
CGCTGTTGTTTCCTTCTTTAGCTGCCGACCGCGTCCAGCTCGCGCGAGCGCCCATCGCGTTCAG
CTGCCCGGCGTGTATCACGGGCGCGCTTGTACGTGCGACCGTACATGACATCTCCCTCTCCGTC
GAAGTCCAGCTCATCCTCGAGCTGAAAGTCTGGGTACCTGGCGCGGAAATCGTCGAGGTCTTCC
CATGTTGCTGATGTATCAGGCTCGTCTTTCAACTGGACAAGCACCTGGCGAATGCCGCGCGCCA
GGCGAGCTTGCGTGACACTTGCGGGCTCTGGCACAACCGCACCATGGACTGTAGGGGGCATCGG
TGGAGTAGTGGCTGGTGGGGTGCCGACGAACTTCTTGAGCACGCCGACATGGAACACATTGTGA
AGACGGGCTCCCGGCGGAAGCTGCAGACGCACGGCTACGTCGTTGATGACTTCCGTGATGTGGT
ATGGTCCGACGTAACGAGGCTTGAGTTTTCCCTTGGGCGCATGCGGCAGGGATGCGGCTGGGCG
CTGACGGAGCCGAAGAAGAGCCCAGTCGCCCTCCTGGTAGGACACCTGGCGGTGATGCTTGTAA
TAGTGTTTCTTCTGTACTGCTTGTGCCTGTTCGAGTCGGTACCTGACATCGTCGAGGAAGGTCG
CACGATCTTCCATCTCCTGGGCGACAGCTGCCACACGAGTCTCACCGGGCTCGTAGGAGCGGAT
GGAGGGCGGGTCACGTCCGTAGACCACCACGAATGGTGTCTCGTGGAGTGAGGACTAGTAAGCG
GTGTTGTAGATGTACTCAGCCCATGACAGCCAGCGCAGCCATTGTCGGGGTCGATCCCCGGTGA
AGCACCATAGGTACATGATAATGACACGGTTTGCTGCCTCTGTCTGGCCGTCCATCTGGGGGTG
GAATGCCGACGACATGTGTAGTTTTGTGCCCATGAGGCGCAGGAGCTCATGCCAGAACACCGAG
GTGAATACTGGGTCCCGGTCGGATACGATGGATTGTGGGATCCCGTGGAGGCGCACTATGTCAG
TGAAGAATGTCTGCGCCACGGACTCGGCGGTGTATGGATGCGCCAGGGGAACGAAGTGGCAGTA
TTTGCTGAAGCGGTCCACGACGGAAAGAATGACCGTCTTGCCGTGCACGCGGGGTAGTGCCTCC
ACGAAGTCGAGACCTATGTCCGCCCAGACGATGGATGGCACCGGTAGAGGCTGCAGCAATCCCG
TCGGGTGGAGGTGTTCGGACTTGTACTTCTGGCAGGTTGCACATGCCCGCACAAAGTCTTGCAC
CCAACTGCGCATGTTGGGGAAATGAAAGTCGCAGCGGAGTCGGTGGAGAGTACAATGGACGCCT
CATGCCCGTCGTCATGGACCGTAGCCAGGATCTCCTGCGGGAGCGGTGAGGCAGGTGGGATATA
GAGGCGGCCATCGAACGCTATCATGCCATCCACCATGGCCCACAGCGCCGTTCTTTTGCCTGCG
CTGAGCTCGGCATGTATGGCGGCCAGCTCGGGATCCGTGGCCTGTGCGTGGTGCGGTCGATCAA
TAAAGTCGAATCGGGGCGCGGAGATGGCCAGCATGGTGCCTTCCTCCGTATCGCGGCGGGAGAG
GGTGTCGGCGACGGTGTTTGTTGCACCCGACCTGTACTCCACCGAGAAGTCGAAGCCCAAAAGC
TTCCCAACCCAGTGGTGTTGGGAATCGTCACCAGACGCTGGTCGAGAAGGTACTTGAGGCTGTA
GTGGTCCGTCTTGATAGTGAAGTGTCACCCCCATAAGTACGGTCGCCAATGCCGCACTGCCTGG
ACAAGGTCGATGAGCTCCCGCTCATAAGCGGCGAGGGCGCGGTGCCGTGGGGTGACGGGTCGAC
TGAAGAAGGCGACTAGGTGCCGATCCTGTACCAGGACGGCGTCGAACCCGTGGGACGACGCATC
ACATTCGACAATGAAGAGCATGGCGAAGTTTGGCATGGCCAGAACCGGGGCTGTGGTGACCGCG
GTCTTGAGGGCCGCGAACGTCGCGGCTGCTTCGTTGTCCCAAGAGTAACCTTCCTTCTTGAGGA
GGGCAGTGAGGGGCGCTGCAACAGTGCCGTAGTTGTGGACGAACTTGAGGTAGTAGCCTGCTAA
ACCGAGGAAGCCACGGACGGCTCGAGCCGAACGAGGAGTCGGCCAGTCGAGGATGGCCTTCACC
TTAGCTGGATCCATGGCGACTCCATCCGCGGATATCACATGGCCGAGGTAGGCGACTGAAGAGG
CGCCAAAGGAGCACTTGGCTCGCTTGACGAAGAGATGGTGATGGCGTAGCTCGTTGAGGACGGC
CCGAAGGTGACGAAGATGATCCGCCCAAGTCTTGCTTTAGACCAAAATGTCGTCAAAAAAGACG
AGGATGAAATGGCGCAGGAAAGGCCGGAGTACGTCATTCATGAGGGCCTGGAACGTAGTCGGGG
CATTGCAGAGCCCAAATGCCATCACCCGGAACTCGTAGAGGCCGTCGTGGGTGCGAAATGTCGT
CTTGTGCACATCTTCCGGCTGCATGCGCACCTGATGGTACCCGGACCGAAGGTCCAGCTTGGAG
AAGAACTGTGCGCCATGGAGCTCATCGAGTAGCTCGTCGACCACTGGAATGGGGAACGTGTCCT
TTACGGTGAGTGCATTCAAGGCGCGGTAGTCGACACAGAAGCGCCAGGAGCCGTCTGGCTTCTT
GACGAGGAGGACCAGCGACGAGAATAGAGAGTCGCTGCGGCGGACGATGCCTTGCTCGATCATG
GCGGCACACTGGCGCTCAAACTCGTCCTTGTGAGCCGCCGGGTACCTGTAGGGGCGGACGGCCA
CCGGCTGGGCGTCCGGCTTGAGGATGATGCGGTGGTCGTGCGCGCGCTTGGGAGGTAGTCATGT
GGGCTCGACGAAGATGTCCTCGAAGGTGGCCAAGAGCCCATCCAGGAGGGGCTCGCTGGCTGTG
GTAGCGCTAAGAGTCGGCGGGCCTAGTGTCGGGACGCTGGACCAGCAAACAGTACGCCCTTGGT
GCTGGAATGTCATACTGCGGTTGGCCAAATCCCAGATGATGGGTCCCAGTGCGCCCAGCCACCT
TGTGCCCAGCACCACGTCGTAGCCTGCCAACGGCATCACGAAGAGGTCGGCCAGGAATGGTGCG
CCGTCGATGAAGAGTGGTGCTGCCTTGATGACGCCCGCGCATGTAACGTGTTCGTCGTTGGCGA
CCATGGCCGTTAGGCAAGGTCGCTGGTGCAGTGGTAGGCCGGAGCGTTAGGCCGCCGTCTCCGA
GATGAAGTTGTGTGTGCTGCCGAAGTCTAGCAGAGCTACCAGCGACGTGGACCAAGTGCGACTG
CGACCTGCATCGTGTCAGTGACGGGGACCCCGGTCAAAGCCTGGAGGGAGAAGACGGGCGCCTC
GGCGTCCTGGTCTATGGCCCCTGCAGCGTCGTCAGCGTCGGAGAGCTCCACCCTGTCGATGAAG
AAGAGACGGCGGCAGGTGCGGTTGTGGCCACGTGTGTACTTCTCGTCGCAGTTGTAGCAGAGAC
CGAGGCGCCGTCGTTCTGCCTATTCCGCCTGGAAGAGGCGCTTCATTGGAGGCGGCGTCGGGGC
CTGTTCCGGTGCTGGCAGGGCGAGGCGCGTCTGAGGGCCTTGCGGGGGTGCGCGCGGCACGGCC
CGAGGCGGTGGTGATACCGGCGTCGAGTGCGCGATCAACTCTAGTTGTCGCGCCAAGCTCATCG
CAGCCGCCAGCATGTGAGGGTTGTGGATGCGGACGGCGTGGCTGAGCGGGGGTAGCAGGCCGCC
CGTGAAGAGCTGGACCCTTTGTGCTTCTTCTAGGCGCCCGGCGCGGGGAAGCAGCGCTTGGAAT
CGGTCTTGGCACTCCGTGACCAACCCCGTGCGCCGGCAGTCGGCGAGCTCGAAGAGCGGCGCGG
ATCGTAGTGGTGGTCCATACCGGAGGTTGATGAGTTCGGTGAAATGGCGCCAGGATGGCGTGCC
CTCGTCCTGCTGGACTTGGATCCACCACATTTGGGCCCCGTCCTCCAGATTGTACCCCGCCATC
CAGACCTTCTCCTCTTCCATGATTCGCTGTTGGTGGAAGTACGACTCACACCGATTAATGAAAA
GGAGGGGTCGGACTTGCCATCGTATTTGGGGAAATCGAGCTTCTGGAAACGTGGAGGTGGTCGG
TCGGTGTTGTGTCCGCCCGTGACTTGCTTGGAGCCGGACAGCTCGAGGATGGCCGTGTGGCCCT
AGCGTTGGCCTCCGCGGTCGCCTGAAGAGCCTTGACGCTTTCGGCGACCTGCGCAATGGTGACC
CTAAGGTCGCTGTTGTCGGCCATGGACGCAGCACAGGAAGCAGCGGACGAAGATGTGGGTGATG
GTGGCGCAGCGGCTGGGAGTGGGTCGACTGGTGGCGAATAAGTGGAACGTGGAGGAGAGGATCG
TCGGGATCGTGATACCAGGTTGTCAAGTGTCTCGGCTCCCAGAGTCGCTGGACCGTGACTACAT
AGCTCGTAGTCGCGCTCCAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.248058898
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b