Detail information of BGIOSGA034817_circ_ag.4


General Information
CircRNA Name BGIOSGA034817_circ_ag.4
ID in PlantcircBase osi_circ_009241
Alias Chr11:2639027_2643567(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 2296324-2300864  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034817_circ_ag.1 BGIOSGA034817_circ_ag.2 BGIOSGA034817_circ_ag.3 BGIOSGA034818_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCCTTTGTGCAGAGGAAAGGGAAAGACCAGAGCTACTTGCTGAATCACGCGAGAGGAGGATA
AGAGTGGCCAAGGAATCCGGAAAAAACGAACGACAGggtgagccagttggttgcccagcttttc
caaatgcgtgctcagatgcagaagctgatgggtgtgatgaccggacaagaagcacttccaggca
tggggaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGCCAGTTGGTTGCCCAGCTTTTCCAAATGCGTGCTCAGATGCAGAAGCTGATGGGTGTG
ATGACCGGACAAGAAGCACTTCCAGGCATGGGGAATCTCATGGAATCTCTTAACGCCGATGAGA
AGGTGATAATCTAACAATGCCTCGGGTGGTGTGGGTGATTTGGTTCACTACAGTTTGGCTGGGT
TACTTACGGTTGCCTGTATTTGTTGTGCATCATGATCATTCAGGCACCTCCTGGCACTGCACGA
CGGAAGAGGAGGCACAGCAAGACGAGGCAGAGGGAGCTGGATGCAGTCCCTAGTTCTTGAGCTG
GTGAGCGTTGTAGTTCAGAGTTACTGCTCTTTTGCTTCAGAGACCCGGATCTGAGAAAAAAGAG
ATGAAAAAAAAATGTTGTCTTGCTACCTTTTTTAGTTTGTACGTAGGAGATCTGCAGGAAGTTC
ATAGGAAGCAGTAATTTCCTACCAAATTGTAATGTTACTTAGCCAGTCCTACTCAGCAATGCAA
TCGGTTCACTCGAATGCTCGGACTTTTTACATTACATTAATCATGAATGTATATGTTGTAGAAG
GATCAGGTTCATTTCAAAACTTCACCATCCATGTCCATTCGAACTCAAGAATTTTCTGATTCAT
GCGGAAAATCGAAAATGTACTGACTGTGTTGGGATTACCATACCCAGAAAAACAAAAGCAAAGT
CCTAAATTTTTTTAAAAAAAAGTTGAAGGGGAAAACATTGAAGTGTAAATAGGCCCATATGTGG
GCCCAACATCGGCAAGCCCGAAAGCCCAATAGGGCCCATATTCAACAATCGCCTCTCTCTTATC
CTCCCCGTTGGTTCCCTCCCCTCCGCAGAACGCCACCAAAAATGGAGGCCACCAGTAGTACTAC
ACTAGCGCTCTCCTCGCCGCCCACCGCCGCCGCCCGCCGCTCGCCGGCGAAGGCGATCGTCACC
TCCCACCACCTGCGCCACTCCTCCGTCCCCGCCCTTCACCTCCGCGCGGTCCCCGGCCCCTCCT
TCCGCGCCCTCCCCTCACCTGGCTTCCCGGTCCCTCCCAACTGCTAGTTTCTTGGCTTCTTCAA
TTCTTCCGCCCCGGATAAATTTCGCTTTTGCTGATTTGTCTTGGATGCGTTCAGGGATGGAGGA
GGAAGAGGGGAAGCGGGCTGGTTGTGCGGGCAGAGATGTTTGGGCAGCTCACGACCGGGCTGGA
GTCCGCGTGGAACAAGCTGCGGGGAACAGGTGAGTTTCTTTTTGTTTTTGACGCAATTTTTCTT
CATGTAAGTTGTAAATTTGTTGTCAATGAGATGAATGAATCAAGGAGATGTCTTTATTGGTTCA
AGATCAACTGACGAAGGACAACATCGCTGAACCAATGCGGGATATCAGAAGAGCACTTTTGGAG
GCAGATGTATGTGGTGTCATTCTTTACATGGTTTTGTTACATTTTCTCGATCTAATTCACTACC
TACTTTGCAGGTGAGTTTGCCGGTAGTGAGAAGTTTTATTGAGTCCGTTACTGAAAAAGCTGTA
GGCACTGATGTGATTCGAGGTGTCAAGCCTGAGCAACAGCTGGTGAAGGTATACTAAACAATGA
CATTATGGCTCTGGATAGTTTTAGGCTTAATTTTCTTCATTTAAGTCTGTGTTAATCTACTAGA
TATTAGTGCATGTTGTGGTATAAGTTCAGCATGCATTGTTTTCACTTCAGAGAAACAAGAGTCA
GATATATTACTGTGTAATTCTAGCACCGGTTGGACTAACGTAAAAAAAACGATGCAGGTTGTGA
ATGATGAACTTGTACAGTTGATGGGTGGGGAGGTATCAGATTTGGTGTTTGCAAAAACTGCCCC
AACAGTTATCCTATTGGCGGGTCTACAAGGTGTTGGGAAAACTACTGTTTGTGCAAAGCTTGCC
TATTATCTAAAGAAAATGGTGCCTTCCTTAGTCCTCTACTTTAAGCATACTCTAAGATTCCTAG
ACTATTGAATGCTTATAGACCAGTCTCAGGTTACAGGGGAAGAGTTGCATGCTGATTGCTGCGG
ATGTCTACAGGCCTGCTGCCATTGATCAACTCACTATTCTGGGGAAACAGGTATTCTGAAGACA
ACACTCTTTCCAGGGTAGTATTGTCTTGGAAACCTTTTCTAGCTACTAATTTTAACTCTCTAAC
ACAAAAATTCAAATTTGCCGCACTCTGCATATTTTACCTGTTTGAAGTTAAAATGACAGCTTCT
TTTAAGTGTATTGCTGTGATGCGCTTTTTAATGAAATACATTTCAACTTTCATAGGTTGGGGTT
CCAGTTTACTCTGAAGGAACTGAAGCTAAACCTTCACAAATTGCCAAGAATGGCATAAAGGAGG
CAAAAAGCAAGAAAACTGACGTAATCATAGTGGATACTGCTGGAAGGCTGCAGGTCATTCTTAT
TTTTTCTTTAATTTTTTCCTCTTGTTTCAGCTATGATTCTAAAAGAACATGGATCTGTTTTTGC
TAGTTTTTACCAGTTGACATCTCACATAAAAATATCTATAATGTCAGATCTTGATCATCTTGAA
CTTTAAAATATTAGTTATGCCTTATGTTCATGTATGTGATTAAATTGCAATAGTTTACACTTTA
CACTTCTATGTAGTTACAAATTTTTGTTTTATCTTTGTTTCAAACTTAACATAGTACTTCCACT
TGTAAAAGATCATCTGATTAGTCCTTCTATGGTTAGGTAGATAAAGCCATGATGAGTGAGTTGA
AAGAGGTAAAAAGGGCAGTAAATCCTACAGAAGTTCTACTTGTGGTGGATGCCATGACTGGACA
AGAAGCTGCATGTACGTAGCTACCACTCATTGTTCTTCCAGGGGTATAGGGATCTAGTAAATAC
TGTTCCCAAATTATTTTTGCCTCACGTACAAGTTTTTGTTCCAAGTATCAATATCATGTTCATT
TTATTGCTTGCTCCTCATGATAATCAAATATTGAACTCGTTATCATCTGCTATAGTTGCCCTAC
GACTTACCCGCATTTCTTTTCTGATATGGCCAGCATTGGTTAGCACCTTCAATGTTGAGATTGG
TATTACTGGTGCTATACTGACAAAACTGGATGGTGATTCCAGAGGTGGAGCAGCACTAAGTATC
AAAGAGGTCTGTTGAATGTGAAAAACAAATGTCCATCATTTTGTTTTTCCATCTAATTATTAGT
TCAGAGTTCTTTATTTTCTCGAACAAGTTCAGAGTTCTTTGTGAAATAATAAAAACCAATTCTG
TCCTGAACAATGTATTAATTCTGCTAAGAAGGCGCAACAATTACTGTTTCCGGTTCATTTTGTT
GGATTCCACTTCCTAGATTCCTCGCTTACTGAAAAAAAAGTTTGGTTGTGTGAGTTCAACTGGT
CCTGACAAATTTGTTGTCTAATAAAAAATGTCCATAATAGGGTTATATGTTATTTGACTTTGTA
TCTGTGACTCTTCCAATTGTATCTTTACATGTTATTCTGGTACTTTTGTCACACCTACATTTCT
CAGCAATTTTACTTTGTGTTCCCTTGGCTGGTAGCATATAATAAATATGAAGAAATGATGAATC
TGTAGGTATCTGGAAAGCCCATCAAGTTTGTAGGGCGAGGAGAACGCATGGAAGATCTTGAGCC
TTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATGGGAGATGTACTTTCATTTGTTGAA
AAGGCACAGGAAGTGGTAGGCAGGCTTCTGTGAAATATTCCTTTCTTTTTTTACTTTAATTAAA
GAACAATTTGATACTCATAGTGTGTAATCTACTGGTACAAGTAGATGCGTCAAGAAGATGCTGA
GGAATTACAGAAGAAGATCCTGAGTGCAAAATTTAACTTCAATGACTTCTTGAAGCAAACACAA
GCTATCGCACAAATGGGTTCATTTAGTCGTATAATTGGCATGATTCCAGGCATGAACAAGGTGC
AAACATGAACTTGTTGAACTCATTGGCTCCTTTATCACTTTACTTTGGAACTAATCTTCACACT
ATGGTACACTGGCGCTTATGTTTCAGCTTCATACTTGATGTTATTAAGACCATAGCTTTTCCGT
GTTTTGAATAGGTTACCCCTGCTCAAATTCGTGAAGCGGAGAAAAACCTTAAATTTATGGAGTC
CATGATCAACGTAATGACCCCTGGTATGTATAGTCTACCAATGACAGGCATCTTGAAGATATCC
TGTTGCTTGTTCCTCCCATTCTCTTGCAATATTAGTGTAGTGTTCCAAATGTAACTGATATTTT
TGAAAATCTGAATCCATCATCTAATTAGTGTTTCAGCTTGGACTGTATCAAGCGATCCAGGCCT
GCCACTGAAATAACACCTTGATGCTAATGGCGTAGAACATAATAGTGATGGATCTTTGTTACAT
GAATATTGTCTTGATAATGTTAATCGTGCCTTTGTGCAGAGGAAAGGGAAAGACCAGAGCTACT
TGCTGAATCACGCGAGAGGAGGATAAGAGTGGCCAAGGAATCCGGAAAAAACGAACGACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021