Detail information of Zm00001d029598_circ_g.1


General Information
CircRNA Name Zm00001d029598_circ_g.1
ID in PlantcircBase zma_circ_000661
Alias circ2553
Organism Zea mays
Position chr1: 78395756-78396088  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d029598
Parent gene annotation Transcription initiation factor TFIID subunit 4b
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Zm00001d029598_T002:1
Zm00001d029598_T006:1
Zm00001d029598_T001:2
Zm00001d029598_T010:2
Zm00001d029598_T007:2
Zm00001d029598_T004:1
Zm00001d029598_T005:1
Zm00001d029598_T013:2
Zm00001d029598_T009:2
Zm00001d029598_T003:1
Zm00001d029598_T008:2
Zm00001d029598_T012:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGTCATCTACCCTCAGATTAACACCGCTAACTGCAGTGACATCATTAAGCTGGTCAATGCTT
TGTTCATGGAAACCCCCAGATACCTTCTGCTTTTTGctgattcccgctaatttttgggtcagag
gtcccttctgcagaatgagcttttcttcttctagttgaacaactttccgagcaacttctgaaac
tcgaccct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATTCCCGCTAATTTTTGGGTCAGAGGTCCCTTCTGCAGAATGAGCTTTTCTTCTTCTAGTT
GAACAACTTTCCGAGCAACTTCTGAAACTCGACCCTCTTCCTTTGGAGCAGAGAAAAGGTGTTC
CTCTTCTTCCTGGCAGAAATCACAAACTGTTATACCTTCAAAATCCATCAAATAATAGGTGCTA
CATGGCAAATGGCATGCACAAAGCCAATAAACATAACAGGTGAAGTCATCTACCCTCAGATTAA
CACCGCTAACTGCAGTGACATCATTAAGCTGGTCAATGCTTTGTTCATGGAAACCCCCAGATAC
CTTCTGCTTTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.422074399
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b