Detail information of AT4G26570_circ_g.5


General Information
CircRNA Name AT4G26570_circ_g.5
ID in PlantcircBase ath_circ_032958
Alias At_ciR4466
Organism Arabidpsis thaliana
Position chr4: 13409247-13411026  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ
Parent gene AT4G26570
Parent gene annotation calcineurin B-like 3
Parent gene strand -
Alternative splicing 4_circ_ag.3 AT4G26560_circ_g.1 4_circ_ag.2 AT4G26570_circ_g.1 AT4G26570_circ_g.2 AT4G26570_circ_g.3 AT4G26570_circ_g.4 AT4G26570_circ_g.6 AT4G26570_circ_g.7
Support reads 3
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT4G26570.1:6
AT4G26570.2:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGAAAAAGCCTTACGCCACGGCGGATGATGAGCCTTCCTTGCGGCGGCTCCGGCGGTTGAAG
GTGACGGTGGTTGCGGTGGAAAACGCGAAAAAAGCTagtcaatcttgtcttctatgggagcatt
tggatgaaagacagagagagcacgcgcaaactcctcaaaccccagtattccattatgctttgtg
tcaaacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTCAATCTTGTCTTCTATGGGAGCATTTGGATGAAAGACAGAGAGAGCACGCGCAAACTCCTC
AAACCCCAGTATTCCATTATGCTTTGTGTCAAACAAATCGAATACCTGTGATTGGTACTGTCAA
GTTATCTTTCAAAAAGGATCTTGGCAAATGGATAACAAAGTCTTTTGATTAAAAAAGAAGAACA
TACCCGGTCTGCAAACAAGCTCTCTTTTTTATTTGTCTTGAACAAGGCTAACTGAAATTCTTCC
TGAACGACAAGACAGGTCAAGGAAAATCAGAAAAGGATGTCCAAAAGACGTAGCAATATGCATG
ATTCGTGAGGAGTATAAGTGAGTGGCATAAAAGACATATAATGATGCCCTTCCTTCATACCTTG
TTTATTAGCCCATCATCAATCACAGCACTGCTGATTTTCTTAAACAGCTCATAGAGAGCCTCTA
TTTCACTCACGCTAACTGCACCCAAACGAGTCAATGATCAAAACACAGAAAGAAAGATTTGCAT
TCCTCTTAACAGAGAGCATCAACTAGAGTAATGGCAAGCCTTTGAATCATACATATAACTGGAA
AAAAAAAGTGCATGGAAGTTAAAATAAGATGGAAAAGAAGTTGAGAGCATACAAACTGTCTCTC
TCGCAAGAAGTTCAGGGTCACCAAGGCCTCCAGATTGTTTGTAAATATCGATATCAAAACACCG
GAAAAAAGAGGAGCATACATGCTTGAAACCGTCTATGCACTGCGACATGATATATCTTGTAAAT
CAAAACTCTCCATGCCTGTTAAATAACAATAAAATGTAAGAACTTTCGAACCACTTGGAAGAAT
CTAAAGACATATGCATTTGAACAAGATAAGTACCTTTTAACCATTTCCTGGTTCGTCAAATAGG
CAATGCTTTGTACACCTCAAAAAATTCTGCGATGGGAAGGAAATGAGATATAGTCAGTTATTAG
CTCATCAAATTGCAAAACAGTTAAAGAAGAATTGACAGGAGCAAACAAGATTCATCATTCTCAG
ATCAGATCTGAATTAGACTAAAGCACCAGATACTATGAAACACAAACAGAGGAGACGCATATTA
TAAACGGTCGTAAACTTTATGCATTAATCTTAACTCCAGATTCATTTCCAGATTAACCAATGTA
TTCATGGATTAGGAACTATCTTTAAGCTAAAACACGAAACCCAAATCTAAGAAACAGCCCCAAA
AAATACATGAACTAGGATAAAATGAGGAATCAAAAACACCCAATTTCACGTCAGAAATGCATCA
TGAATTTTGCGGGGAAAAAAAATGCATCATGAAGAACATAATAAAACTATCCAGACGGATTAAT
CGTCAGAAAATATAATCCTCTGAGGATCGACACCTGAATCTAATCGCGATATGAATCAGAGAAG
TGATTAAGCTAAGGAGAAATGACGGATATGAGAAAAAGCGATCCAATGAGTTTTAGATTCCAAA
TCGTTCGGATTCAGAGATACAACAACGATGAATCTCGTTATATAAACTTGGTAATCAGCTCATG
GATCTATCAGCTTGCGAAGAAATTAGTTGCTTGATTCTCAATCTCAAATTTTAACTTGTTTCCC
ATCGCGATTTTCCCGGAATAAACACACGAGATTACGAGGAAGCGACCGACCGCGAAATCGTAGA
AAAGGGAGAAAGAGAAGAAGAAAAAGCCTTACGCCACGGCGGATGATGAGCCTTCCTTGCGGCG
GCTCCGGCGGTTGAAGGTGACGGTGGTTGCGGTGGAAAACGCGAAAAAAGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.128648287
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015