Detail information of BGIOSGA008979_circ_g.1


General Information
CircRNA Name BGIOSGA008979_circ_g.1
ID in PlantcircBase osi_circ_004239
Alias 2:32367716|32367949
Organism Oryza sativa ssp. indica
Position chr2: 32367716-32367949  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method find_circ
Parent gene BGIOSGA008979
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA008979-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACATGGGGCAGGCTGCTTATATCTCACAACACCACAGCTTTGAGAATGCTTATCATATTGGAT
TCTATGTGTCAGTACCAGGTACTCTCTTGGATTAGGtccatggtctttatatcttgacatgtgc
ttgtcattcttgaagtaaatcattgattatcttcagtttcttatgttatctctgcttccaacag
attgcgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCCATGGTCTTTATATCTTGACATGTGCTTGTCATTCTTGAAGTAAATCATTGATTATCTTCAG
TTTCTTATGTTATCTCTGCTTCCAACAGATTGCGTTCATGTCTGTGGTTTATCCAGCTCTAGTT
CTTGCTTACATGGGGCAGGCTGCTTATATCTCACAACACCACAGCTTTGAGAATGCTTATCATA
TTGGATTCTATGTGTCAGTACCAGGTACTCTCTTGGATTAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021