Detail information of Os06g0113900_circ_g.8


General Information
CircRNA Name Os06g0113900_circ_g.8
ID in PlantcircBase osa_circ_042238
Alias NA
Organism Oryza sativa
Position chr6: 797072-797244  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0113900
Parent gene annotation Major facilitator superfamily, general substrate transporter dom
ain containing protein. (Os06t0113900-01);Major facilitator supe
rfamily, general substrate transporter domain containing protein
. (Os06t0113900-02);Major facilitator superfamily, general subst
rate transporter domain containing protein. (Os06t0113900-03);Si
milar to cDNA clone:J033107D23, full insert sequence. (Os06t0113
900-04);Similar to cDNA clone:J033107D23, full insert sequence.
(Os06t0113900-05);Hypothetical conserved gene. (Os06t0113900-06)
Parent gene strand -
Alternative splicing Os06g0113900_circ_g.4 Os06g0113900_circ_g.5 Os06g0113900_circ_g.6 Os06g0113900_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0113900-02:1
Os06t0113900-01:1
Os06t0113900-03:1
Os06t0113900-04:1
Os06t0113900-05:1
Os06t0113900-06:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGATGATCTGGATTGGGTGCAGCAGCGGAAGTGAGATCAACGGGAACAGGAAGTAGAGTATCC
AGAGCACGAGCACAAGGACTGGctgtggctcttgaagtagaaaccagcaccagacacaaatagg
cagatgatgaacccaagcagctgcatgcgaacagcatcagcacgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 173
Transcript exons: 797072-797244
CTGTGGCTCTTGAAGTAGAAACCAGCACCAGACACAAATAGGCAGATGATGAACCCAAGCAGCT
GCATGCGAACAGCATCAGCACGGATGATGATCTGGATTGGGTGCAGCAGCGGAAGTGAGATCAA
CGGGAACAGGAAGTAGAGTATCCAGAGCACGAGCACAAGGACTGG

Genomic sequence CTGTGGCTCTTGAAGTAGAAACCAGCACCAGACACAAATAGGCAGATGATGAACCCAAGCAGCT
GCATGCGAACAGCATCAGCACGGATGATGATCTGGATTGGGTGCAGCAGCGGAAGTGAGATCAA
CGGGAACAGGAAGTAGAGTATCCAGAGCACGAGCACAAGGACTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.294315896
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study