Plant Circular RNA Database

Detail information of HORVU4Hr1G012870_circ_ig.1

			
						 General Information
					
						CircRNA Name
						HORVU4Hr1G012870_circ_ig.1
					
						ID in PlantcircBase
						hvu_circ_000020
					
						Alias
						NA
					
						Organism
						
							Hordeum vulgare						
					
						Position
						
							chrchr4H: 43659892-43661664  JBrowse»						
					
						Reference genome
						
							Hv_IBSC_PGSB_v2.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaves, seeds
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	HORVU4Hr1G012870_circ_ig.1
ID in PlantcircBase	hvu_circ_000020
Alias	NA
Organism	Hordeum vulgare
Position	chrchr4H: 43659892-43661664 JBrowse»
Reference genome	Hv_IBSC_PGSB_v2.38
Type	ig-circRNA
Identification method	CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	NA
Tissues	leaves, seeds
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGGATATCGCATTGTTCCAACAGGAAATGTAGTGATCCGTAAACATGGTAGATGTTATCTGAAT
TCATTGGTTCAGATCTCATGGCTCAATGGGATGGTGctggaaggaacaatggcggatgcaacac
agctaagcacccctttttctttgtctacgcttctccagcattgttcatagggattgggacttca
ggggcctt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGGAAGGAACAATGGCGGATGCAACACAGCTAAGCACCCCTTTTTCTTTGTCTACGCTTCTCC
AGCATTGTTCATAGGGATTGGGACTTCAGGGGCCTTGCCTTTCCCTCTACAAATCCACAAGATT
TTGCCAAAAACATCAAAAGGGACTGCCAAATGAGGTCATATAGGACTTCAGCTAGTACAGATTA
CAAACAACTATACTAGATCTAGCAAGAAATAAGAATTCTTAGAAAAGTGTAAGCCCAGAAGATG
GGTGCTTTGATCAAACAGAACTGTAATTACATAAAATGGGTGCTTTGATCTTGCTGGTGTAGAC
ATAGAGTACAACTAGTGCAGATTACAAGCAAGCACATATCAGACTTAAACAATAGCAAACAGTA
AATTTAAATTTTCTGATAAGGAAGTCTACAGCAATCAAACATGGAGATGCTGACTTGCAATGTT
AAAATATATACACCAGTACACCATGGCTGCTTCAGATGTTCAGTTATATTCGGAAAAGCATGAT
GTGTGTTCAAATGAAATGGTTACTGAAAAAGGTTCTCACCTTGTTCCAGTAGAACATGTAGTGA
TCCATAATTTTTAAAACATAGAAAACGTTCAGTAAATTCATTGGATCAGGTCTCGTGGTTCCAC
AGGATGGTGATGCAAAAGCACGATTTTTTTTGCGAATTTAGTAGCAAACCTGCAACGCACAAAA
GAGACCAGATGGTTAGCAACATATTGTTCGTCCTGAAGCTAGTTTAGTAAGAAATAACATTTAG
CAACAAAAATATTAGTTTTTTTTAGAAGTTTGTAGCAAGCATGCAATGTGTGGTACTGAATAAT
ACAGAAAGCCCGTGTTCAGATTGTCACTGAAAAAAGGACCTCACATTGTTCCAATGGAACATGT
AGTGATCCGTAAACATAGTAGATGTTATCTGAATTCATTGGTTCAGATCTCATGGCACAACAGG
ATGGTGCTGCAAAAAGCACGATTTTTCGAGAAATTAGTACCAAACCTGCAATGCACAAAAAATA
CCAAATTGTTAGCAAATCTGCCATCCGTCCCGAAGCTAGTTCAGTAAGAAAGAACATCAAGCAA
AATCAGGTAAGCTTTTTTTTAAGTTTGCGGTGAGCATGCAGTGTGCAGAACTGGATAAATCATT
AGTTCTAAACAAAGAGCACGAAACAAGAACAAAGAGAATGTCTGACACTCGTGTAACTACAGCC
TGAAAGTATAATGCTGCAAATTTTATATTGCCCATGAATTCTCAGTTATTACCTTTGTAAAATG
TTGTCCTGGTCAAAGTTCTCCTGGCTAGAGCAGAGATGATATCTAACCTGAAAAATACTGTATC
ACTTAGCTAATAATTCCAGCAATACAAATTCCACCTGCAGACCCTGAATAAGTGGATAGCGTAC
CATACAATATGCAGTACGCATCACAGATATGTATTACTGTGAAAGCACAATTTTCTTTTGAGAA
TTTAGGTAGCAATTCTGCTATTCAAACAAACGAGATCAAATGGATAGCAAACCTGTTGTTTTTC
CTGAAGCTAGTTTAGTAAGAGAGAACATTTAGCAACAAAAATATAAAATTTTTTAGAAGCTTAC
AGCGAGCATGTAATGCGTGCCGCTGAATAATTCAGAAAAGCATGAAGCCCGTTTTCAGATGGTT
CCTGAAAAAGGGATATCGCATTGTTCCAACAGGAAATGTAGTGATCCGTAAACATGGTAGATGT
TATCTGAATTCATTGGTTCAGATCTCATGGCTCAATGGGATGGTG
						
					

			
		

Sequences
Splice junction sequence	GGGATATCGCATTGTTCCAACAGGAAATGTAGTGATCCGTAAACATGGTAGATGTTATCTGAAT TCATTGGTTCAGATCTCATGGCTCAATGGGATGGTGctggaaggaacaatggcggatgcaacac agctaagcacccctttttctttgtctacgcttctccagcattgttcatagggattgggacttca ggggcctt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGGAAGGAACAATGGCGGATGCAACACAGCTAAGCACCCCTTTTTCTTTGTCTACGCTTCTCC AGCATTGTTCATAGGGATTGGGACTTCAGGGGCCTTGCCTTTCCCTCTACAAATCCACAAGATT TTGCCAAAAACATCAAAAGGGACTGCCAAATGAGGTCATATAGGACTTCAGCTAGTACAGATTA CAAACAACTATACTAGATCTAGCAAGAAATAAGAATTCTTAGAAAAGTGTAAGCCCAGAAGATG GGTGCTTTGATCAAACAGAACTGTAATTACATAAAATGGGTGCTTTGATCTTGCTGGTGTAGAC ATAGAGTACAACTAGTGCAGATTACAAGCAAGCACATATCAGACTTAAACAATAGCAAACAGTA AATTTAAATTTTCTGATAAGGAAGTCTACAGCAATCAAACATGGAGATGCTGACTTGCAATGTT AAAATATATACACCAGTACACCATGGCTGCTTCAGATGTTCAGTTATATTCGGAAAAGCATGAT GTGTGTTCAAATGAAATGGTTACTGAAAAAGGTTCTCACCTTGTTCCAGTAGAACATGTAGTGA TCCATAATTTTTAAAACATAGAAAACGTTCAGTAAATTCATTGGATCAGGTCTCGTGGTTCCAC AGGATGGTGATGCAAAAGCACGATTTTTTTTGCGAATTTAGTAGCAAACCTGCAACGCACAAAA GAGACCAGATGGTTAGCAACATATTGTTCGTCCTGAAGCTAGTTTAGTAAGAAATAACATTTAG CAACAAAAATATTAGTTTTTTTTAGAAGTTTGTAGCAAGCATGCAATGTGTGGTACTGAATAAT ACAGAAAGCCCGTGTTCAGATTGTCACTGAAAAAAGGACCTCACATTGTTCCAATGGAACATGT AGTGATCCGTAAACATAGTAGATGTTATCTGAATTCATTGGTTCAGATCTCATGGCACAACAGG ATGGTGCTGCAAAAAGCACGATTTTTCGAGAAATTAGTACCAAACCTGCAATGCACAAAAAATA CCAAATTGTTAGCAAATCTGCCATCCGTCCCGAAGCTAGTTCAGTAAGAAAGAACATCAAGCAA AATCAGGTAAGCTTTTTTTTAAGTTTGCGGTGAGCATGCAGTGTGCAGAACTGGATAAATCATT AGTTCTAAACAAAGAGCACGAAACAAGAACAAAGAGAATGTCTGACACTCGTGTAACTACAGCC TGAAAGTATAATGCTGCAAATTTTATATTGCCCATGAATTCTCAGTTATTACCTTTGTAAAATG TTGTCCTGGTCAAAGTTCTCCTGGCTAGAGCAGAGATGATATCTAACCTGAAAAATACTGTATC ACTTAGCTAATAATTCCAGCAATACAAATTCCACCTGCAGACCCTGAATAAGTGGATAGCGTAC CATACAATATGCAGTACGCATCACAGATATGTATTACTGTGAAAGCACAATTTTCTTTTGAGAA TTTAGGTAGCAATTCTGCTATTCAAACAAACGAGATCAAATGGATAGCAAACCTGTTGTTTTTC CTGAAGCTAGTTTAGTAAGAGAGAACATTTAGCAACAAAAATATAAAATTTTTTAGAAGCTTAC AGCGAGCATGTAATGCGTGCCGCTGAATAATTCAGAAAAGCATGAAGCCCGTTTTCAGATGGTT CCTGAAAAAGGGATATCGCATTGTTCCAACAGGAAATGTAGTGATCCGTAAACATGGTAGATGT TATCTGAATTCATTGGTTCAGATCTCATGGCTCAATGGGATGGTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.496287888

Conservation Information
Conserved circRNAs	NA
PMCS	0.496287888

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Darbani et al., 2016

circRNA

Detail information of HORVU4Hr1G012870_circ_ig.1

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