Detail information of Os04g0496400_circ_g.2


General Information
CircRNA Name Os04g0496400_circ_g.2
ID in PlantcircBase osa_circ_024390
Alias NA
Organism Oryza sativa
Position chr4: 24836161-24839019  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0496400
Parent gene annotation RNA recognition motif, RNP-1 domain containing protein. (Os04t04
96400-01)
Parent gene strand +
Alternative splicing Os04g0496400_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0496400-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTGCAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGA
TGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgatgacctagaaggcaaaaatgacaact
atgaagttgaagacatgacttttgcacatgaggaagaagttttccaagcaccagatattgctgg
ttcaacca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 866
Transcript exons: 24836161-24836370,24836460-24836552,24836662-24836700,24
836804-24836893,24836977-24837079,24837151-24837231,2483
7692-24837768,24837919-24837999,24838928-24839019
GATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAG
AAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCCGA
AATTGAAATCAAAGAACCAACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAG
AAGCCAGCCGATAAAAAGGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACA
CACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAGATTGTGGAGGTATTTTC
CAAATGTGGAATTATAAAGGAGGACCCAGAGACAAGAAAACCCCGAGTAAAAATCTATACTGAC
AGAGAAACAGGCAGAAAGAAAGGTGATGCGCTAGTGACCTACCTCAAGGAGCCTTCTGTAGCAC
TAGCAATTCAACTGTTGGATGGGACATCATTTCGCCCTGGTGGTAAGACTCTAATGTCTGTTAG
CCCGGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAA
AGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGA
CGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAAC
TCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAAT
GTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATG
GTATCAAATGCATAGAGAAGATGAATGGAAGATG

Genomic sequence GATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAG
AAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCCGA
AATTGAAATCAAAGAACCAACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAG
AAGCCAGCCGATAAAAAGGTATATACAAGTAATTTTTGTCTAAGTGCTTGACTAGTTTTCCATA
AGCTAATTCTTTGAAACTGTTAACTTTCTTTTTATATATGTAGGAAGCTAACAAACCTCCAGAT
AGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAG
CTGAGGAGGTAAGTTGCTTATATCTTTAAAAGCACTTTGTATGCTTTGAATGACCTATTTAACA
CATTCATGATTATGTAAATAGTGTCTGGTTTTGATGGTGAATTTCTTTTGCAGATTGTGGAGGT
ATTTTCCAAATGTGGAATTATAAAGGAGGTATATTTATTTTTGAGTTGCAGAGGCAACTTCTAT
CCTTGAATTCTGATGCAGACTGTTCTTCGCTTCTGATGATTTCACATCTAAATTTTTGGTGACA
TAGGACCCAGAGACAAGAAAACCCCGAGTAAAAATCTATACTGACAGAGAAACAGGCAGAAAGA
AAGGTGATGCGCTAGTGACCTACCTCAAGGTAGTCCCTTGTAAAGCTCATCTGATTAGAAGCTC
TCGTTATGCTCGGTTATCATGTGCGTTCTTTGGTTTTCTATTATTCAGGAGCCTTCTGTAGCAC
TAGCAATTCAACTGTTGGATGGGACATCATTTCGCCCTGGTGGTAAGACTCTAATGTCTGTTAG
CCCGGCCAAATTTGAGCAGAAAGGTAAGCAGAGTATTTGTCAGAAACAGATAAGCTATGCAGAA
GATGTTACTGATGCTGTCAATCTGCTTCAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCA
AAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTAAGTTCTATTTTTTA
TGGTTATTTTGAATTTGTGATGTGCTGCAAATTACACTATGTGATGGGTTTTGGTTGTCAATAT
TCGATGTAGATGCAGCCCTATCGTAGTCTATGCAAAATGTTTTTCATGCTTCATTATGAACTTA
TTGTCTGAGCCTTGGAAGCCTATTACCAATTCTAATTTGCTAATGGAAGGTTATATCCCCACTG
CTTGCTTGCATCATTTTTTTTAATCTTTTCATTTTATGAAGGAATACTGAAGAGAGACACAGAA
CATTATGTTACAGAACACCATAAACTGTTTTTTGTATTCAGGATGTTGATTAAGCATTATGCCA
TTGTATAATGAGCACATGCTTTGGTAGTCATGCAAGGAAAATATTTTATCATCAGCCGAACATG
AGCTTTGAATGATATAACTTGTTTTATTTCTTTGTATTGTAACACTTTTCTGCTATTAGGTGGA
CATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTG
AATTGCGAGTAAGTAACTGAAGCATGCTTTGACGTATGCCAGAAGTGTGCCCTTCTGATACAAT
TTCTTAATTGTTTGATTAGTCCCATGGATTTCATTATGCATAGCAACTTCTTATGTTTTATTTG
GATTGAGGAAGAAAATCTTGATCATTTCAGGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAG
ATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTAATCATTAACTTCGC
CTTTCTTTGTTTGTCTTGCCATCATACAAGAGCTGGAGTGTAAAATGGAACTGCTTGTGTGTAG
CATGTTTTGGATCCATTATGCATGTATAACTCTCTTGTAATTCCACTCCAAATGCTTACCAGAC
TTCCTTTTAGCTGCTTCCTTTTTCATCTAGTCCTGATGTGTACAGGAGCAACATGGAATGCAGT
AGTTCCTAGCTGCAGTTTCTGATATGGTTTCCTATATCACTTTTGGAGTTTAGCCTCTGTACAA
CACTATGACTAAATGCATAGGAGGTAATTGCATCTGCATTCTACAGAAAGGCTGCTGCTGGCAT
GAGAAATGCTCTCCATTAAAAGGCCTTACAAAAATAAGGATGGGAAAAGGTTACTCAATTGATG
AGTGAGGCATGCTGAGTAACTAAGGTGATCAACCTTGCCATGGGCCGGTGCGTCGGATTTCATG
GGGCCATCCTTATATGGTACTCTCTCCGTCCCAAAATATAAGCATTTCTAGCTACGAATCTGGA
CATTAGCTAGAAATGCTTATATTTTGGGACGGAGGGAGTACCTTGCTTACACTAGGGAACAAAT
TGAATGCCCAACACATGTATATGTAATAACTCTTATGGTTCTTAAATAACTCGAGATCATTGCT
CTATGGGGCTACTATTACCATTCCAGGCCTGGTAGGACTTCCATCACAAAAGGTTGAGTTGAAC
TTAGCCAGAAATTTGGGTTGGCTGGGCCTTCCGTTTATCACAAATTTAACTTGGCTCTAAAACT
GGATCCTGTTAATATTCCTTTTAAGTTTTCATATTATTGTTGACTATCTATAAACTCAGTGAAC
TGGTCCTAACCACCAGGAAATTGTTTTTGTCCTTTTCAACCATCCCACTTACGTTCAACGCACA
TGTTTCTGCTTGCAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACC
GGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.1227633
Functional Information
Coding potential Y
Potential coding position 24836204-24836167(+)
24838994-24836167(+)
24836265-24837224(-)
Potential amino acid sequence MTFAHEEEVFQAPDIAGSTTLEENNVSAEIEIKEPTKVEKRADKKRKSSEKPADKKEANKPPDS
WFDLKVNTHVYVTGLPDDVTAEEIVEVFSKCGIIKEDPETRKPRVKIYTDRETGRKKGDALVTY
LKEPSVALAIQLLDGTSFRPGGKTLMSVSPAKFEQKGDVFISKKTDKQKKRKTKKVEDKILGWG
GHDDKKVTITTTVILRHMFTPAELRADETLLPELEADVREECMKLGPVDNVKVCENHPEGVILV
KFKDRKDGIKCIEKMNGRWMT*(+)
MHREDEWKMDDLEGKNDNYEVEDMTFAHEEEVFQAPDIAGSTTLEENNVSAEIEIKEPTKVEKR
ADKKRKSSEKPADKKEANKPPDSWFDLKVNTHVYVTGLPDDVTAEEIVEVFSKCGIIKEDPETR
KPRVKIYTDRETGRKKGDALVTYLKEPSVALAIQLLDGTSFRPGGKTLMSVSPAKFEQKGDVFI
SKKTDKQKKRKTKKVEDKILGWGGHDDKKVTITTTVILRHMFTPAELRADETLLPELEADVREE
CMKLGPVDNVKVCENHPEGVILVKFKDRKDGIKCIEKMNGRWMT*(+)
MWLNQQYLVLGKLLPHVQKSCLQLHSCHFCLLGHPSSIHLLYAFDTIFPVFEFHQNNTLWMIFT
DLDIINWTKLHAFFSNICLKLGKKSFIGSQFSRSEHMPQNNCSCNRHLLVIMSTPS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017