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circRNA ID
AT1G01470_circ_g.1
Alias
ath_circ_000070
Organism
Arabidpsis thaliana
Position
chr1: 172418-172705  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRI
Parent gene
Parent gene annotation
LSR3
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
GTTAGTAGGTTTTACCTGCCGGCGCTGTGGAAAGTGAAACTGATCTCACAGATCGGAATCGAAT
GACTGTAAGGATTGGTGACAGAGACTTTGGCCAAGTgtccacaccaacgtctcgagccaggtta
aacagtatactatacggcaccaccacgggaatatcaagagccgtcatgtccttagctttcagag
aacccggg
Support reads
6
Tissues
NA
Exon boundary  
No-No
Splicing signals  
AC-CA
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GTCCACACCAACGTCTCGAGCCAGGTTAAACAGTATACTATACGGCACCACCACGGGAATATCA
AGAGCCGTCATGTCCTTAGCTTTCAGAGAACCCGGGTCCGGTATCTTCCCCTTTCCAATCTCCC
TGTTTACAAATAATTAGATCTCTGTTGTTTACAAAATCTAACAAAGAACCAAACGACGGAGTTA
GTAGGTTTTACCTGCCGGCGCTGTGGAAAGTGAAACTGATCTCACAGATCGGAATCGAATGACT
GTAAGGATTGGTGACAGAGACTTTGGCCAAGT
Number of exons covered
AT1G01470.1:2
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Sun et al., 2016

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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