Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024327_circ_g.1 |
ID in PlantcircBase | zma_circ_010204 |
Alias | zma_circ_0000152 |
Organism | Zea mays |
Position | chr10: 64823226-64828295 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024327 |
Parent gene annotation |
RING/FYVE/PHD zinc finger superfamily protein |
Parent gene strand | - |
Alternative splicing | Zm00001d024327_circ_g.2 Zm00001d024327_circ_g.3 Zm00001d024327_circ_g.4 Zm00001d024327_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d024327_T002:4 Zm00001d024327_T001:4 Zm00001d024327_T003:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.096076665 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
64828194-64823236(+) 64828241-64823292(+) 64823266-64828068(-) 64828247-64828288(-) |
Potential amino acid sequence |
MSGNNPRIRLRKRATSCISESIILPVSFPPFLPLPFES*(+) MHIRINNPTSKLSTIFTIALRKLAESVFSPPILFWTHRIHH*(+) MGGEKTLSASFRRAMVKMVESLLVGLLILICMMLPVSLIVFWDCFQTFRIGKFYLNTNYLTFSQ AYLI*(-) MHDVARFLNRILGLFPDIQNRQVLSEHKLFDLFTSILDIVIQNARIEGQLDSGIVDIKAKSVEM KESPKTVHVDTVSGASTILYTFTVDRGVSWELANSILEERLKDKAGSSSDGFYESRKEWAGRRH FLLAFEGQW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |