Plant Circular RNA Database

Detail information of Os09g0436300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os09g0436300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_039291
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 16039535-16043491  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os09g0436300						
					
						Parent gene annotation
						
							Peptidase, trypsin-like serine and cysteine domain containing pr
otein. (Os09t0436300-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0436300-01:5

General Information
CircRNA Name	Os09g0436300_circ_g.1
ID in PlantcircBase	osa_circ_039291
Alias	NA
Organism	Oryza sativa
Position	chr9: 16039535-16043491 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os09g0436300
Parent gene annotation	Peptidase, trypsin-like serine and cysteine domain containing pr otein. (Os09t0436300-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0436300-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCGCAATCTCAATAGGCAAGAATGGAACAGTATCCTTGTCGTAAAAAGTGATGCCGAGAATCCT
CCTTTCCAAATCCATGACAAGGCCCCCAATGAAAACctgttattgaagcaattgttgtgttcac
cagaagcaattcctatattcagctttgcaacaaacttagtgttatctctgggccttcgtatttc
agcctata

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGTTATTGAAGCAATTGTTGTGTTCACCAGAAGCAATTCCTATATTCAGCTTTGCAACAAACT
TAGTGTTATCTCTGGGCCTTCGTATTTCAGCCTATATTCCAAAGAGAAAAGAAAGGTTTTTAAT
ACAGTGACAAAAGGATGATTACTAATATGGTTGCCAACTAACCTGGACAGTCACTTTATCCTGC
GTGGGCATTGCAGCCGCCATTTTATCAAGAAATATCGAAGTAAGCTGAGAGTAGGAAATCAAAC
ATGAGTATGAACTCCAAATAGTTGGGTCAAGTAACAGTTATATTAAAGACCACAATGTTTCTCA
GACTGAAGGACTTTTTCTGCCTGCAGTGTCTTCCGTTAAAAAGAAAAGAGAAAAAAAGATAGTA
CAAAATATAGCAATTCACCAACCAGAATGGAGGATAGAAATGAGGTGTGGTTGAGAGAAGATAG
GATCATAGAACTTGCAGAAAAAAACAGGTGGGGATACATGGATGGGGATTCCTTTTTACTATGG
AAGAGTAATTCTCAGATGAACCAGCAATAGTTGGTGCTAACATATTTTTTTCACATGTTTAGCA
ATGCAATTGAAAACCAAATAGCTCAGCATCAGGAAATAAAGTTCTTTTTTTTGCCTTTCAACTG
GAACTTCTCGGACTCAAAGCACTTTGATATTCTCAATAAAATAACTCATCAAAGCTTTTCAAAT
TCATATAGGATCTGCATCCAATTCATTTTTCATGATCCTATGATAATCCACCCACAGCTCTAAC
TGCGCAAATGGCAAACAGAAGTGCTACAGACAAACATCAATAATAATACCTGAGACAGAGAGTA
GAGAACAATGTCATCAACACTACAGATGATATCACCAGCCTCAATGCTGCTACAATTTTCTGGT
AACACTTCTGATATCTAAAAAAAATGTAGTTAAGTCAATGGAATGCAAGAACAGAGAACATGCT
ATAAGGGCTTGTTTGGTTTGATGCCAATTTTCGCCTTACCAAAATTTTGGTAACTTTAATAGTG
GTAAATGTACATTTGGTTTGGTACCAAATTTTGCCTATAATAGTTCAGAGTCAATACTACAAAA
TTTGGTAGTGCCAAAAGGCCCAAAACTTGCCAAGGTTTTGGCACTACCAATATTTTGGTAGGAC
AAAAATTGGCTTCAAACCAAACAAGCCCTAAGTTAATTTCTTGAAGAGGGTACTCTGGCTGGAG
CACCGACCATAATGCTGCTCTTGTGAGGGGGAGTCCAGGTCCAATAGAGGAATAGGTGAAGTGC
TAATCAGATGGCATTGGTCTGGCTTCACCAAGTTAGCCTGAGGGTCGATAATTAAATGAGGTAT
AGTTTCCCTCGCCTGAATGCCAAAAGAGGATAGCAGATGCCTACAGAGTGGTATTTTCCCATAT
GGCACAGGCACACAGCTTTTCACTGGTATTTAGATGAACCATGACCTTTTTTAGTTTTGTTTTC
TTCTAAACTGATGATCTTGATGTCATAGAAAAGTTTTATTAAATCTACAGAAGAATGGAAAATT
GAGATAAAGTTTCCAGTTGTACTTATTTTGTTTCTCCTAACATGATGTATCAATATGAAACTTG
ATATTTTAAAGAATGCCGCAAATAACTTTTTTTTTTCACAAATGGAAAAATGGTCCGTCGCTCC
AAGTTTGCAAAACGACCTTTGCATATCCATATCAAAAGTTTCCTCCATTTGAGAACTCCCCCTA
TATGTTGATTTCTGTCAATTCTAACATAATAAAACCCCAATAAAAATCAGTGGAGCAATAGTGT
TTGACTTTGGCATATGTCTACCCCGTATAATTTGTTTGTTCAGCTTAGCATGCTCGAGTTTGCA
GATAAAAACAATTACGTTTCTATTAAAATAGAGAGAACGAGCGGAATCGCACGAGTTGTAACTG
ACATATCATAAGTTGTGGGGGTGCTTCCTAGTTCCTAATAGAGTGGTATGTAGAAGGGCCTATG
CAATTTCCCCAAAAAGATTTCAGAATTACTCATAATCATGCCTACACTATAGCTTGGAACAAAT
ATATGCTGATCATTCTAGTATTTTTCATCATTATTTGAGCGAACTTATTATGATATTTATGCCT
ATTCTAATCCAGTTATGACAAAAAAAGTAAACTGATACTGATGCATATTTTAACACATAAAAAT
GTAGGGCCACAAGAAGCAAACGATACTTTCACATCATCACATGGCAAATTAACACTCAAATAAG
TAGATACTCTTCCATGTATATGCAAAAACAAACCTCGCTCTAACTTGTAGTAATCAAACACAGC
CCTTTCTGATTATTATTGGCAGTGGTTCATCATGCTCTAGATGATAGTAAGTAACCTTCAAAAG
TAGAGAGAGAAGAAAAGGAGGGGATTGGCTACCTTCTCTACCACAATTCCAGAACCAGAAGACA
GCTCAGGATACATGTAGCATATTTTTTCCAAATTGCATATTTCCAACTTGTGAATAGCTTGTCC
CCTTATGCAAAGAGATGGTTGTTTGAGTGTCCTACATTCATAGCGCATCACATCTCTTGCAAAA
GCATTAAAACAAGACTCCACAAATGCGTACAGACATCCATAAATAGCACAAAACTTTATCCTAC
TTCTGTTCCTACTACTACTAGTTATTAGCTTCAGCAATTTATATAATAAAAGCAGGTAAAATTT
ACTTTTAAAAGATCCAAGAGTGGGTAAAATATTATGCAAATATGTACTTTTTTCTAATAACACT
GGACAGAATACTAGGGAAATATTTCTGTGGAAAGACAGAATAAATTACATAGTTACCAAGGTCA
AAGAGAATAATAGCCAGAGAAAACCATGTCAAACAATGAAAGAAGAGATGGTACTCAAGGAAGA
AAGTGGTAAACACAAATTCAACACGGGCACTGTGGTTATACTATAGCTTGAAGGATGCTAAAAC
ATTAGCTAAGTTATCAGAAAAGAAAGGCACCCATTGAACAAGGATGTAGTTGCACCCCCTTCCG
TAAATATTTTGTTTGTTTTTTTAAAAAAATCTCTAGAGATGTAATAATATATAATGTTATGTGC
ACACAAAATTTTGAAGAAGCAACCTTTCAAAACCAGAAAAATAACACCCTGAACCATATTTCAT
GTTAGTTTTGATCGAACGGAGTGGCTTCTCACCAACATGTTCAGTCAGGTAAGTTTCATTGTTG
TGGACCTATTAAGTATCATCTACAGTAGCAAAATATGCATAACAAGAGTACAAACCAGGAAAAC
CAAGTCCACTTAAAACAAACCACTAAGAAAGTATGTCTAGGGTGTTATTTGTCCGATTTTGAAA
GTTGGGGCCTTGGGGGTAAAAATAACTGGTTTTGTAGTTGTGTGAAATAATGGACTTCGAGCAA
AGTTCAAGGGCCAAAAATGTACTTCACCGAAAAAAGAAAGGAAAGTTGTCTTTCTTTGACTTAC
TTATCTTCCCTTTCACAATGCACATGTAATCATTTTTTTGTTCATTTGCGTGTGTGAACATATT
TTTAACATGCCCTACATGTATATGGTTTTTCCGAAGTACGTGAATCGTATAAGTGCAAATTTCA
AATGGGCATAGCCGCAGAGCGGTTTAACAGATTGAGACAACAAAAATTACTCGCAGGACTAATG
ATAGTGGATCATAGAACTTAACAACTAGAAAAAACATTGTCTCAAACTAGATTTAAAACTAATT
CAGAAGAATCCAGATTGCTCAGGTATGCAAAAAATGTACATGTGTGTGGGGATGACAGTATTAC
AGACTGGCAAAGTGCATATCATATCATTAAAACCCAAAGAGAAAGCATACCTGAAATTCTTGAA
GTGTTCCAAGCATCTCACCGCAATCTCAATAGGCAAGAATGGAACAGTATCCTTGTCGTAAAAA
GTGATGCCGAGAATCCTCCTTTCCAAATCCATGACAAGGCCCCCAATGAAAAC
						
					

			
		

Sequences
Splice junction sequence	CCGCAATCTCAATAGGCAAGAATGGAACAGTATCCTTGTCGTAAAAAGTGATGCCGAGAATCCT CCTTTCCAAATCCATGACAAGGCCCCCAATGAAAACctgttattgaagcaattgttgtgttcac cagaagcaattcctatattcagctttgcaacaaacttagtgttatctctgggccttcgtatttc agcctata
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGTTATTGAAGCAATTGTTGTGTTCACCAGAAGCAATTCCTATATTCAGCTTTGCAACAAACT TAGTGTTATCTCTGGGCCTTCGTATTTCAGCCTATATTCCAAAGAGAAAAGAAAGGTTTTTAAT ACAGTGACAAAAGGATGATTACTAATATGGTTGCCAACTAACCTGGACAGTCACTTTATCCTGC GTGGGCATTGCAGCCGCCATTTTATCAAGAAATATCGAAGTAAGCTGAGAGTAGGAAATCAAAC ATGAGTATGAACTCCAAATAGTTGGGTCAAGTAACAGTTATATTAAAGACCACAATGTTTCTCA GACTGAAGGACTTTTTCTGCCTGCAGTGTCTTCCGTTAAAAAGAAAAGAGAAAAAAAGATAGTA CAAAATATAGCAATTCACCAACCAGAATGGAGGATAGAAATGAGGTGTGGTTGAGAGAAGATAG GATCATAGAACTTGCAGAAAAAAACAGGTGGGGATACATGGATGGGGATTCCTTTTTACTATGG AAGAGTAATTCTCAGATGAACCAGCAATAGTTGGTGCTAACATATTTTTTTCACATGTTTAGCA ATGCAATTGAAAACCAAATAGCTCAGCATCAGGAAATAAAGTTCTTTTTTTTGCCTTTCAACTG GAACTTCTCGGACTCAAAGCACTTTGATATTCTCAATAAAATAACTCATCAAAGCTTTTCAAAT TCATATAGGATCTGCATCCAATTCATTTTTCATGATCCTATGATAATCCACCCACAGCTCTAAC TGCGCAAATGGCAAACAGAAGTGCTACAGACAAACATCAATAATAATACCTGAGACAGAGAGTA GAGAACAATGTCATCAACACTACAGATGATATCACCAGCCTCAATGCTGCTACAATTTTCTGGT AACACTTCTGATATCTAAAAAAAATGTAGTTAAGTCAATGGAATGCAAGAACAGAGAACATGCT ATAAGGGCTTGTTTGGTTTGATGCCAATTTTCGCCTTACCAAAATTTTGGTAACTTTAATAGTG GTAAATGTACATTTGGTTTGGTACCAAATTTTGCCTATAATAGTTCAGAGTCAATACTACAAAA TTTGGTAGTGCCAAAAGGCCCAAAACTTGCCAAGGTTTTGGCACTACCAATATTTTGGTAGGAC AAAAATTGGCTTCAAACCAAACAAGCCCTAAGTTAATTTCTTGAAGAGGGTACTCTGGCTGGAG CACCGACCATAATGCTGCTCTTGTGAGGGGGAGTCCAGGTCCAATAGAGGAATAGGTGAAGTGC TAATCAGATGGCATTGGTCTGGCTTCACCAAGTTAGCCTGAGGGTCGATAATTAAATGAGGTAT AGTTTCCCTCGCCTGAATGCCAAAAGAGGATAGCAGATGCCTACAGAGTGGTATTTTCCCATAT GGCACAGGCACACAGCTTTTCACTGGTATTTAGATGAACCATGACCTTTTTTAGTTTTGTTTTC TTCTAAACTGATGATCTTGATGTCATAGAAAAGTTTTATTAAATCTACAGAAGAATGGAAAATT GAGATAAAGTTTCCAGTTGTACTTATTTTGTTTCTCCTAACATGATGTATCAATATGAAACTTG ATATTTTAAAGAATGCCGCAAATAACTTTTTTTTTTCACAAATGGAAAAATGGTCCGTCGCTCC AAGTTTGCAAAACGACCTTTGCATATCCATATCAAAAGTTTCCTCCATTTGAGAACTCCCCCTA TATGTTGATTTCTGTCAATTCTAACATAATAAAACCCCAATAAAAATCAGTGGAGCAATAGTGT TTGACTTTGGCATATGTCTACCCCGTATAATTTGTTTGTTCAGCTTAGCATGCTCGAGTTTGCA GATAAAAACAATTACGTTTCTATTAAAATAGAGAGAACGAGCGGAATCGCACGAGTTGTAACTG ACATATCATAAGTTGTGGGGGTGCTTCCTAGTTCCTAATAGAGTGGTATGTAGAAGGGCCTATG CAATTTCCCCAAAAAGATTTCAGAATTACTCATAATCATGCCTACACTATAGCTTGGAACAAAT ATATGCTGATCATTCTAGTATTTTTCATCATTATTTGAGCGAACTTATTATGATATTTATGCCT ATTCTAATCCAGTTATGACAAAAAAAGTAAACTGATACTGATGCATATTTTAACACATAAAAAT GTAGGGCCACAAGAAGCAAACGATACTTTCACATCATCACATGGCAAATTAACACTCAAATAAG TAGATACTCTTCCATGTATATGCAAAAACAAACCTCGCTCTAACTTGTAGTAATCAAACACAGC CCTTTCTGATTATTATTGGCAGTGGTTCATCATGCTCTAGATGATAGTAAGTAACCTTCAAAAG TAGAGAGAGAAGAAAAGGAGGGGATTGGCTACCTTCTCTACCACAATTCCAGAACCAGAAGACA GCTCAGGATACATGTAGCATATTTTTTCCAAATTGCATATTTCCAACTTGTGAATAGCTTGTCC CCTTATGCAAAGAGATGGTTGTTTGAGTGTCCTACATTCATAGCGCATCACATCTCTTGCAAAA GCATTAAAACAAGACTCCACAAATGCGTACAGACATCCATAAATAGCACAAAACTTTATCCTAC TTCTGTTCCTACTACTACTAGTTATTAGCTTCAGCAATTTATATAATAAAAGCAGGTAAAATTT ACTTTTAAAAGATCCAAGAGTGGGTAAAATATTATGCAAATATGTACTTTTTTCTAATAACACT GGACAGAATACTAGGGAAATATTTCTGTGGAAAGACAGAATAAATTACATAGTTACCAAGGTCA AAGAGAATAATAGCCAGAGAAAACCATGTCAAACAATGAAAGAAGAGATGGTACTCAAGGAAGA AAGTGGTAAACACAAATTCAACACGGGCACTGTGGTTATACTATAGCTTGAAGGATGCTAAAAC ATTAGCTAAGTTATCAGAAAAGAAAGGCACCCATTGAACAAGGATGTAGTTGCACCCCCTTCCG TAAATATTTTGTTTGTTTTTTTAAAAAAATCTCTAGAGATGTAATAATATATAATGTTATGTGC ACACAAAATTTTGAAGAAGCAACCTTTCAAAACCAGAAAAATAACACCCTGAACCATATTTCAT GTTAGTTTTGATCGAACGGAGTGGCTTCTCACCAACATGTTCAGTCAGGTAAGTTTCATTGTTG TGGACCTATTAAGTATCATCTACAGTAGCAAAATATGCATAACAAGAGTACAAACCAGGAAAAC CAAGTCCACTTAAAACAAACCACTAAGAAAGTATGTCTAGGGTGTTATTTGTCCGATTTTGAAA GTTGGGGCCTTGGGGGTAAAAATAACTGGTTTTGTAGTTGTGTGAAATAATGGACTTCGAGCAA AGTTCAAGGGCCAAAAATGTACTTCACCGAAAAAAGAAAGGAAAGTTGTCTTTCTTTGACTTAC TTATCTTCCCTTTCACAATGCACATGTAATCATTTTTTTGTTCATTTGCGTGTGTGAACATATT TTTAACATGCCCTACATGTATATGGTTTTTCCGAAGTACGTGAATCGTATAAGTGCAAATTTCA AATGGGCATAGCCGCAGAGCGGTTTAACAGATTGAGACAACAAAAATTACTCGCAGGACTAATG ATAGTGGATCATAGAACTTAACAACTAGAAAAAACATTGTCTCAAACTAGATTTAAAACTAATT CAGAAGAATCCAGATTGCTCAGGTATGCAAAAAATGTACATGTGTGTGGGGATGACAGTATTAC AGACTGGCAAAGTGCATATCATATCATTAAAACCCAAAGAGAAAGCATACCTGAAATTCTTGAA GTGTTCCAAGCATCTCACCGCAATCTCAATAGGCAAGAATGGAACAGTATCCTTGTCGTAAAAA GTGATGCCGAGAATCCTCCTTTCCAAATCCATGACAAGGCCCCCAATGAAAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.193357381

Conservation Information
Conserved circRNAs	NA
PMCS	0.193357381

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16043472-16043391(-)
						
						Potential amino acid sequence
						
							MDLERRILGITFYDKDTVPFLPIEIAVRCLEHFKNFRTLKQPSLCIRGQAIHKLEICNLEKICY
MYPELSSGSGIVVEKISEVLPENCSSIEAGDIICSVDDIVLYSLSQLTSIFLDKMAAAMPTQDK
VTVQAEIRRPRDNTKFVAKLNIGIASGEHNNCFNNRFSLGALSWIWKGGFSASLFTTRILFHSC
LLRLR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16043472-16043391(-)
Potential amino acid sequence	MDLERRILGITFYDKDTVPFLPIEIAVRCLEHFKNFRTLKQPSLCIRGQAIHKLEICNLEKICY MYPELSSGSGIVVEKISEVLPENCSSIEAGDIICSVDDIVLYSLSQLTSIFLDKMAAAMPTQDK VTVQAEIRRPRDNTKFVAKLNIGIASGEHNNCFNNRFSLGALSWIWKGGFSASLFTTRILFHSC LLRLR*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os09g0436300_circ_g.1

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