| CircRNA Name |
AT3G59970_circ_g.10 |
| ID in PlantcircBase |
ath_circ_028389 |
| Alias |
At_ciR3515, AT3G59970_C2 |
| Organism |
Arabidpsis thaliana |
| Position |
chr3: 22153254-22153607 JBrowse» |
| Reference genome |
TAIR10.38 |
| Type |
ue-circRNA
|
| Identification method |
CIRCexplorer, CIRI-full, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
| Parent gene |
AT3G59970 |
| Parent gene annotation |
Methylenetetrahydrofolate reductase 1
|
| Parent gene strand |
+ |
| Alternative splicing |
AT3G59970_circ_g.2 AT3G59970_circ_g.3 AT3G59970_circ_g.4 AT3G59970_circ_g.5 AT3G59970_circ_g.6 AT3G59970_circ_g.7 AT3G59970_circ_g.8 AT3G59970_circ_g.9 AT3G59970_circ_g.11 AT3G59970_circ_g.12 |
| Support reads |
2/15 |
| Tissues |
leaf/aerial, whole_plant |
| Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
| Splicing signals |
GT-AG
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
| Number of exons covered |
AT3G59970.2:1
AT3G59970.3:2
AT3G59970.1:1
|
