Detail information of AT5G55180_circ_g.1


General Information
CircRNA Name AT5G55180_circ_g.1
ID in PlantcircBase ath_circ_044199
Alias NA
Organism Arabidpsis thaliana
Position chr5: 22388985-22390265  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT5G55180
Parent gene annotation O-Glycosyl hydrolases family 17 protein
Parent gene strand +
Alternative splicing AT5G55180_circ_g.2
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G55180.1:1
AT5G55180.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACGCTTCCTACGCGTTCAACAGTTACTATCAGAAGAACGCACGTGGAGTTGGCACGTGTAATT
TTGGTGGTGCAGCGTACGTGGTCTCGCAACCTCCTAattctggaatgatcggagttaactacgg
ccgtatagcagacaatcttccggcaccggagaaagtagttgagctactgaaaacacaaggaatc
aaccgcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1281
Transcript exons: 22388985-22390265
ATTCTGGAATGATCGGAGTTAACTACGGCCGTATAGCAGACAATCTTCCGGCACCGGAGAAAGT
AGTTGAGCTACTGAAAACACAAGGAATCAACCGCATCAAGCTTTACGACACCGAGACAACTGTA
CTAACCGCACTCGCGAACTCCGGAATCAAAGTCGTTGTCTCTCTCCCCAACGAAAACCTCGCTT
CCGCCGCCGCAGATCAGAGCTACACCGACACTTGGGTTCAGGACAACATAAAGAAGTACATTCC
AGCGACGGATATCGAAGCAATCGCCGTTGGGAACGAAGTGTTCGTCGATCCGAGGAACACGACG
ACGTATCTCGTTCCAGCTATGAAGAATGTTCAAAGCTCTCTCGTCAAGTTCAATCTCGACAAAT
CCATTAAGATCTCGTCGCCGATTGCTTTAAGCGCGTTGGCGAGTTCGTATCCACCGTCGGCTGG
TTCGTTTAAACCGGAGTTAATCGAACCGGTTATTAAACCGATGCTTGATCTCCTCCGCAAAACG
TCGTCGCATCTTATGGTGAATGCTTATCCTTTCTTTGCTTACGCAGCTAACGCCGATAAGATCT
CGTTGGATTACGCGTTGTTTAAGGAGAACGCCGGGAATGTTGATTCCGGTAACGGTTTGAAGTA
TAACAGTCTCTTAGACGCTCAGATCGACGCCGTTTTCGCCGCAATGTCCGCCGTTGGATTTAAC
GACGTTAAGCTTGTGGTGACAGAGACAGGCTGGCCTTCTGCCGGAGACGAGAACGAGATTGGTG
CTGGTTCGGCTAACGCGGCGGCGTATAACGGCGGGTTAGTTAAAAGAGTGTTGACGGGAAACGG
AACGCCGTTAAAACCGAAGGAGCCACTAAACGTTTATCTGTTCGCTCTGTTTAACGAGAATCAG
AAAACGGGTCCGACTTCTGAGAGAAACTACGGGTTGTTTTACCCAAACGAGAACAAAGTGTATG
ACGTTTCGCTCAACGGTAAGTCAACGCCGGTCAACGATAACAAAGAGAAGGTTGTTCCGGTGAA
ACCGTCGCTCGTGGGACAGACGTGGTGTGTGGCGAATGGTAAAACGACGAAGGAGAAGCTTCAG
GAAGGTCTCGACTACGCTTGTGGCGAAGGAGGTGCTGATTGCCGTCCGATTCAACCGGGTGCCA
CGTGTTATAATCCTGAATCGTTAGAAGCTCACGCTTCCTACGCGTTCAACAGTTACTATCAGAA
GAACGCACGTGGAGTTGGCACGTGTAATTTTGGTGGTGCAGCGTACGTGGTCTCGCAACCTCCT
A

Genomic sequence ATTCTGGAATGATCGGAGTTAACTACGGCCGTATAGCAGACAATCTTCCGGCACCGGAGAAAGT
AGTTGAGCTACTGAAAACACAAGGAATCAACCGCATCAAGCTTTACGACACCGAGACAACTGTA
CTAACCGCACTCGCGAACTCCGGAATCAAAGTCGTTGTCTCTCTCCCCAACGAAAACCTCGCTT
CCGCCGCCGCAGATCAGAGCTACACCGACACTTGGGTTCAGGACAACATAAAGAAGTACATTCC
AGCGACGGATATCGAAGCAATCGCCGTTGGGAACGAAGTGTTCGTCGATCCGAGGAACACGACG
ACGTATCTCGTTCCAGCTATGAAGAATGTTCAAAGCTCTCTCGTCAAGTTCAATCTCGACAAAT
CCATTAAGATCTCGTCGCCGATTGCTTTAAGCGCGTTGGCGAGTTCGTATCCACCGTCGGCTGG
TTCGTTTAAACCGGAGTTAATCGAACCGGTTATTAAACCGATGCTTGATCTCCTCCGCAAAACG
TCGTCGCATCTTATGGTGAATGCTTATCCTTTCTTTGCTTACGCAGCTAACGCCGATAAGATCT
CGTTGGATTACGCGTTGTTTAAGGAGAACGCCGGGAATGTTGATTCCGGTAACGGTTTGAAGTA
TAACAGTCTCTTAGACGCTCAGATCGACGCCGTTTTCGCCGCAATGTCCGCCGTTGGATTTAAC
GACGTTAAGCTTGTGGTGACAGAGACAGGCTGGCCTTCTGCCGGAGACGAGAACGAGATTGGTG
CTGGTTCGGCTAACGCGGCGGCGTATAACGGCGGGTTAGTTAAAAGAGTGTTGACGGGAAACGG
AACGCCGTTAAAACCGAAGGAGCCACTAAACGTTTATCTGTTCGCTCTGTTTAACGAGAATCAG
AAAACGGGTCCGACTTCTGAGAGAAACTACGGGTTGTTTTACCCAAACGAGAACAAAGTGTATG
ACGTTTCGCTCAACGGTAAGTCAACGCCGGTCAACGATAACAAAGAGAAGGTTGTTCCGGTGAA
ACCGTCGCTCGTGGGACAGACGTGGTGTGTGGCGAATGGTAAAACGACGAAGGAGAAGCTTCAG
GAAGGTCTCGACTACGCTTGTGGCGAAGGAGGTGCTGATTGCCGTCCGATTCAACCGGGTGCCA
CGTGTTATAATCCTGAATCGTTAGAAGCTCACGCTTCCTACGCGTTCAACAGTTACTATCAGAA
GAACGCACGTGGAGTTGGCACGTGTAATTTTGGTGGTGCAGCGTACGTGGTCTCGCAACCTCCT
A
Conservation Information
Conserved circRNAs NA
PMCS 0.264473859
Functional Information
Coding potential Y
Potential coding position 22388993-22390262(+)
Potential amino acid sequence MIGVNYGRIADNLPAPEKVVELLKTQGINRIKLYDTETTVLTALANSGIKVVVSLPNENLASAA
ADQSYTDTWVQDNIKKYIPATDIEAIAVGNEVFVDPRNTTTYLVPAMKNVQSSLVKFNLDKSIK
ISSPIALSALASSYPPSAGSFKPELIEPVIKPMLDLLRKTSSHLMVNAYPFFAYAANADKISLD
YALFKENAGNVDSGNGLKYNSLLDAQIDAVFAAMSAVGFNDVKLVVTETGWPSAGDENEIGAGS
ANAAAYNGGLVKRVLTGNGTPLKPKEPLNVYLFALFNENQKTGPTSERNYGLFYPNENKVYDVS
LNGKSTPVNDNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGEGGADCRPIQPGATCY
NPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPNSGMIGVNYGRIADNLPAPEKVVE
LLKTQGINRIKLYDTETTVLTALANSGIKVVVSLPNENLASAAADQSYTDTWVQDNIKKYIPAT
DIEAIAVGNEVFVDPRNTTTYLVPAMKNVQSSLVKFNLDKSIKISSPIALSALASSYPPSAGSF
KPELIEPVIKPMLDLLRKTSSHLMVNAYPFFAYAANADKISLDYALFKENAGNVDSGNGLKYNS
LLDAQIDAVFAAMSAVGFNDVKLVVTETGWPSAGDENEIGAGSANAAAYNGGLVKRVLTGNGTP
LKPKEPLNVYLFALFNENQKTGPTSERNYGLFYPNENKVYDVSLNGKSTPVNDNKEKVVPVKPS
LVGQTWCVANGKTTKEKLQEGLDYACGEGGADCRPIQPGATCYNPESLEAHASYAFNSYYQKNA
RGVGTCNFGGAAYVVSQPPNSGMIGVNYGRIADNLPAPEKVVELLKTQGINRIKLYDTETTVLT
ALANSGIKVVVSLPNENLASAAADQSYTDTWVQDNIKKYIPATDIEAIAVGNEVFVDPRNTTTY
LVPAMKNVQSSLVKFNLDKSIKISSPIALSALASSYPPSAGSFKPELIEPVIKPMLDLLRKTSS
HLMVNAYPFFAYAANADKISLDYALFKENAGNVDSGNGLKYNSLLDAQIDAVFAAMSAVGFNDV
KLVVTETGWPSAGDENEIGAGSANAAAYNGGLVKRVLTGNGTPLKPKEPLNVYLFALFNENQKT
GPTSERNYGLFYPNENKVYDVSLNGKSTPVNDNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEG
LDYACGEGGADCRPIQPGATCYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPNS
GMIGVNYGRIADNLPAPEKVVELLKTQGINRIKLYDTETTVLTALANSGIKVVVSLPNENLASA
AADQSYTDTWVQDNIKKYIPATDIEAIAVGNEVFVDPRNTTTYLVPAMKNVQSSLVKFNLDKSI
KISSPIALSALASSYPPSAGSFKPELIEPVIKPMLDLLRKTSSHLMVNAYPFFAYAANADKISL
DYALFKENAGNVDSGNGLKYNSLLDAQIDAVFAAMSAVGFNDVKLVVTETGWPSAGDENEIGAG
SANAAAYNGGLVKRVLTGNGTPLKPKEPLNVYLFALFNENQKTGPTSERNYGLFYPNENKVYDV
SLNGKSTPVNDNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGEGGADCRPIQPGATC
YNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPP(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017