Detail information of BGIOSGA033849_circ_igg.1


General Information
CircRNA Name BGIOSGA033849_circ_igg.1
ID in PlantcircBase osi_circ_003181
Alias 11:16781729|16786282
Organism Oryza sativa ssp. indica
Position chr11: 16781729-16786282  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033849_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAGGCTAAGCACCTGTAGAGACCATGGACAGCAAGGTTCAATGCTTCTGTGTAAGCAGCTGG
ATTTTGCCGCAGAGATTGATCTCTGTCTATGTCAATctctgacctcttcgttcccagcttccca
aaaaacagaagatgtggagtatgcgacagctaaaccatgtgtttccaagagtatagcatagcaa
actccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGACCTCTTCGTTCCCAGCTTCCCAAAAAACAGAAGATGTGGAGTATGCGACAGCTAAACC
ATGTGTTTCCAAGAGTATAGCATAGCAAACTCCAACTTGAGGAACGGTCATTGGCCTCAAGGAT
CCTGACCCACTCAAATCTCAGAGCAGCCACTAGTCTGCAGAGTGACCTTGTCCCTTGCAGCCAG
GTCTTTTGCATAATAGGCACCAAACGACCTCCTAATCCCGCTAAAAGATAACGGATGGAATATG
TGGAGATCAAGCCTTTGGGATCAGCATTGTGACATACCCGTAACGCCAGACAGAAGCTCCACAC
GGTCTCTCTTTAGATCCTCATGTGAGCAGTGAGCTCTCCGGGATCATTGACAGCTCCAAAATCA
ACACTATTAATCGCGGCAGTTCCATCCGCATGAGGTAGTTTCATCAAACACGTTACGAAGGGCA
GGGCATGGGGGCATTCCGATGGCTTTCTGCAAAGTCCCTGACTATACGCTTAAGGGTTCTTCCG
CCTTTCCCTTGCATGTAAGCATGGTTGTTTCTGACATTATCACCAGTCCTACTGTGAAGATAGT
CTGAGGCTGCATCATGAAGTACGTTGAGCCATAAAGGAACTATCATCTCAGCTTCCCCTTGCCT
TAGGTACTCTGAGGGCATAGATTTCACCTGGACAAGATTGGAAAAACGTTAGCCCATGATGGTG
TTGCAACACGTCAAAGTTAAGCTTCATGCAGAAAATACATTAGTCGGAAATACTTTTCAAATGA
ATATAACACGCCAAAACACCAGAAGGTAGCTCAAAATGTTCAGGTGTCAACAGTACTTGTTACT
AGTCCGACATGACAACAATGTCTGCCTACAATCCTACATATATGGATTAATGGCTAGTATGTAG
ATGCAAACTGATGATTTCTAGTGACTAAAAATTAGTGTATCATGTAAATCAAATAAACAGAAAT
ATCATCTGTAATTTTCAAATGATATTTGACCCAGATCCTCTTGCAAATCCACGTCATGTTCATC
GTGATTTTCAAGATTGATGTACAGTACTACTAACCTTATGCATGACATGTGTTCTAATGCTTTG
ATGTTAGACGAACAAAAAAATAAACAAAAACACATAGGGTTCCTTTCGCAATTACACCAAGGGG
GTTATTGTAGAAATGCAGTACCGCTGATTGCAGCCATCGACAAAGGGAATCCCAAGAAATAATG
GCCTTCCACGTTGTTCTCTCACAGAGGCTGCACACTGCTGCCAACTGCTGCAATATTGTTGCAG
ATTTATGCACCTGTTGGAAAGAAAGAAATGTGAATATCATGCAAAGTCTCTATGGCCACATATC
CTGCCCTCTGAGTGGACCATATTTATAAAAGAATCAAATCATAGATATGATCAATGGTACTAAA
CTGGAAAAGCAACAGAAAGTAAACTTTAAGCAAGTAATCATTATGGTCAGGGTGCAAACATAAG
CGAGGGAAAAGGTAAAAAGATGGGCTTTGAAGCACAAGCATAGGAGCAATTGTGTGGAAGCAAT
GGTACGATGGTGCTCTTTGAAACTGTACCCACCCTTGACAAGGCCGATACACCAAGTAGAGCAT
AAAGTACATTTGACATGAGACCTTCACCGCAGCGTGCCAAAATTTGAGCTAGCACCACACCAGG
TGATCCATCAGAGGGGTGCTCTCGAGATTCTAGTGCAGCAGCGAGGCTAACATCAAGAAAACCT
ACATGTGTCATGGCAAATGATCAAATGAGCACAAAAACATACTAGGTGCTACACGATGTTTCAA
GTGCAATAGCTTGAGCTGAATGCTGAAGCATATGTCACAGTAACAGATTAAGGTATGTAAACGG
TATGAACAGTGCAGCAAGTACAAATAGATCTTTTAACTCCAAAGGGATTATAAATGTGATGAAA
AGAATAACGCTTTCTACCACCAACTCACATTACAGTGATACACTAGTTCCAACAGACATAATAA
TGTAACAAACCTTATCCAGAAAGTAGCTGAAAAGGCATCCATGACTTTGCAGGGGAAAAACACT
AACTTGACATGATTGCTTACCAGTAGACCACAATCCAAGCATTATTTTTCTTTGCATATACTTT
ATCTTCTCAGGGGAATAAATTTCTTTAAATTAAAAAACCAACAGGCCAATAGGACATTATCCTT
TTTGCTGAAATGGATGAGCAGTATGCATTCATTGTTTCCCCTTTATGCAACTGGCTAATTTACT
AACATTCCATGACAAAAAAACAAATGCTCTAAGAAAAAAGGTGTTCAATTGATAAAGAAAAAAA
TATATACATAAAGGTGGATAGATATCCTCACATGACATATATGACATCGCAGCAAGTGCTGCTC
CTCGGTGCATTGCTGTAGAGCATATAGCTGCCTTTTGAAATGACAACTCAAGCAGGGAGCCAGA
TGCGACAATAGCTTCCTGATGATATATGCAATCAACACAGATAACTACTATCAGACTCACTATC
CATATCATGCAGCAGCAATGAACCAAAACACCTTAACATATAAGACACAATAAATTCACCTTTG
GGCAGCAGCGAATAAATGTGGATGTAAAGTTTGCATAGGCTTCAACAAGATCAGGTTCTTGATC
ACATGTGTAAGAAGAATTCAAAGTAGATATTGAAGCTGCAGAGCTAAGTGCTTCGAAAGTTCTG
ACACATAAAGCAACATATTCTTCCTTGTGACCAAATTCTTCAATAACACTGGCAGCTGAAAATG
TCGTTGATGTCAAGGCAGTGTGGAGTCCACAAATATATTGAATAAGATGCTGCAGTAGTATCTT
AGTGTTTTAAGCCTATCTTGTGCATTGTTTTGTAAATGTAAAGCTACAAAATACTTCAAAAATT
ATATTCTAAGAGCATGGGATGGTGGCTAAAAATATATCACAAGTACATAGCAAAGGCAGGTAAA
TAGCAGCTATTGATGTCCCAAATGCTTTAATTAAAGGCAAACCTATGTAGATGGGATTAATCTA
TTCCTGTGAGTACTAGCATATGTATTACTGTGATGTAGGTAGTAATCCACAAGTCAAATGTACA
TGTAAATCAGCAACTGCTAGCATGTTGGTAAAAATACTAGCAAGTTCATTGTAGAGTTGAATAA
CAGAAAGCAAATTACATATGCACACATGTAAACCCTCTTACCTGTTCTTAAGAAGCAGTCATGC
CTTTGAAACAGTAAGAAATTTGTTGATAAGCATTCCAGAACTTTAGGTAACAAAATCTGGAAGT
GTTGTCCTGTAAAATGCAATTGCTTGATCAGCACAACGATCTAATGCTATTAGTCTTGAAATTT
TGCATTGCAGGTATCATTTAACTTACCACAAGAATGTATGGCTGAAGAAAGAGAACGACATGCA
GCTGCAGATAAACTAACATTCTCCATATGAGATGATCGGGAAAGTCTTTCAAGAAGTGGCCAGA
ATATACCAAGAAGAACCAAAACCGTGTCATCATCAATCAGACTAGATGTAATTGATGTCGCCAA
ATGGCCAAATAAAGCACCCATCCTGAAAAAGGAAACTTCATTTTCATTTGCTTACATTGTAGAT
CACAGCATGTTTCTAATTTTCTTCCACGGCATCCAAAAATCCCTCCCAAAATACAATATCCTTA
AAAATAGGTTCAAAATGACTGGTTGTTACTTGTGTTCTTTTATCTGTCAAATTCTATGATCCGG
TCAAAGCATATCATATTGTTTTTTCTATAGCTTGCCATAAATGATCTAAGTGGGAGGATGTAAA
AGTATCCACCTTTCCAAGAACCAAATAACTCCCAACTCAATGGTAAAGCCATCTTTTTATTAAA
GATCACATCAACATCAACCAACAGGAGATGCTTCTCCACTTGCTTTGCTCTCCTTTTGTTAATC
TAGAACAAAGCGGTTTCATGTTTACAGTCAATTTTTCTTCCGCGCAGCTGACTCTAGATAGCAT
TTATTCATCTCTATTGGCTAGAATGTAGTTGGTGATACTGCACAGCTTTCACTGGATAGTTCAA
AAAGTAATATGATTGGATACTTATACATCAATTGAATATATTTATGCTGGCATGTTCTTTTGAT
GATCGCCCCAAAAGCAAATACTCGCTTTCTGCACAACTTTGTACTTCAAGTTGTAGTTATTAGT
TAAGTTATACTTCAATTAAATATCATTCAACATGAGGCTTTGCATAGTTTATGACTTTGAATAG
TCTATAATATGTTGACACAACGGAAAATTGCACCAATATTAATCAAATTTATATTATTTACAGT
ACAAAAAACTATTTTTCTTCAAACTGCTAACTTTAGTACCATTTCGTTAACATGCTTGATTCTT
GAATTAGTCAAGTGTAGTAGTATCATTGAAAAGTGTGGAAGATACAAAAATATATATATTGCTA
GAAAAAATGGGGCCACAAAATGTAAGAATGAAAGAACTTAAAGGCTAAGCACCTGTAGAGACCA
TGGACAGCAAGGTTCAATGCTTCTGTGTAAGCAGCTGGATTTTGCCGCAGAGATTGATCTCTGT
CTATGTCAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021