Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018496_circ_g.1 |
ID in PlantcircBase | zma_circ_008849 |
Alias | Zm05circ00142 |
Organism | Zea mays |
Position | chr5: 221804552-221805249 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d018496 |
Parent gene annotation |
Pumilio homolog 4 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018496_T003:1 Zm00001d018496_T005:2 Zm00001d018496_T002:1 Zm00001d018496_T009:1 Zm00001d018496_T004:1 Zm00001d018496_T001:1 Zm00001d018496_T007:1 Zm00001d018496_T006:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.142729047 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
221805132-221804654(+) 221804612-221804554(+) |
Potential amino acid sequence |
MGSHGSSRRSGSGEALMGSSACQMSVAMDHGARALLMHCRIEGNQEGRKHVETKTEGYGDGSIS SGSGGGWPHL*(+) MAPSQAAAVVAGPTFEDLERDLQAVLMDQNHTSPTDDLSIFRSGSAPPTVEGSRTAIGALFPGP QLHANSLGDGGGGGGTDAGVDMLTEEEIRSHPAYLSYYYSNEHLNPRLPPPMVSKEDWRAAQRF QAVSGGIGDRRRPSEVGSGNSLFSVQPGAHGEKALLNHRVGRGERNGLARQQSSEWLGRGADGL IGLSDVSGHGSRRKSFADALQD*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |