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circRNA ID
Zm00001d047361_circ_g.1
Alias
zma_circ_006424, circb73-0429
Organism
Zea mays
Position
chr9: 127688418-127689356  JBrowse»
Reference genome
AGPv4.38
Type  
ui-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d047361
Parent gene annotation
protein_coding
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
AGGTACGGTGCCGAGCGCCATCAGCCGGTGTGGCAGTAGGGGACAAAAAAAAGATATATAATAT
ATGTGGTGATTGGTATAGAGTTGATGTATGGAGTAAgcctggatggaagaaattctccttcaga
acatgctcccattttgtaggtgaaccgccatactggtcaactggagaggagattaggcacggtt
cctgagac
Support reads
4
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
AT-TT
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GCCTGGATGGAAGAAATTCTCCTTCAGAACATGCTCCCATTTTGTAGGTGAACCGCCATACTGG
TCAACTGGAGAGGAGATTAGGCACGGTTCCTGAGACTCTTATGTGAAAATATTAATTTATATAT
CCATCTTGCTACTCCCTCCAGCTTCCTTCTACAGGTACATGTAACTTCAGCATTCAAAATTGTC
CACGAACGTAAACATTTCTGGCATAATCAACCCCTGACACTCCCTCACCATTAATATTTGGAAG
CAGTTTTATTTTGGTGTCAAGCATGTTTAGCATCAATACAATCTTGGTGTTTAAAGTTTTAATT
AGCACTTGGCGTTTATGGCATCTATACGAAAGCAAGGCATTAACTGAGTCTCTGTAATCTTGGT
GATTGATTGAGGGATATCACAGTCATTTCCCTTCCTCCTAAATGGCCCAAAAATGCTAGAAATG
CTTACATTTGTGAAGCGAGGGAGTACCTTCTACTGTGACATTGAGGCCTTTTGCTGTCTCAAGC
CCAGGTGAGCATGTTGAAGCTCATATTTGAGTTTACAAGCTGAAGCTTCTGCTTCAATCCACAA
GTTTCTATAGATTGACGCTTGAGAAACTTTAGTGTTGTCAAGCATCTTATCCTCCTGGTGATTA
GTAAGGCTACCCGCAGTGATATACTGTAAAGAAGACGCCACCAATATAAGGCTAGGTATAGAGT
AAAATTTTACTGCAGTGGAGTACTCTATAGGTAGCTGTAAACTTATGGGGGGCAAACAAAACGT
TATTTACAGCGTCGATGCTTTTTTACTCTATCGATGCTTTTTTACTCTATCAGTCCACACGTCC
ATGCAGCAGGTACGGTGCCGAGCGCCATCAGCCGGTGTGGCAGTAGGGGACAAAAAAAAGATAT
ATAATATATGTGGTGATTGGTATAGAGTTGATGTATGGAGTAA
Number of exons covered
Zm00001d047361_T002:2
Zm00001d047361_T001:2
Zm00001d047361_T003:2
Zm00001d047361_T005:2
Zm00001d047361_T004:2
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
127687795-127689279(-)
Potential amino acid sequence
MGACSEGEFLPSRLTPYINSIPITTYIIYLFFVPYCHTG*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Luo et al., 2019

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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