Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d027991_circ_g.1 |
ID in PlantcircBase | zma_circ_006424 |
Alias | zma_circ_0000346 |
Organism | Zea mays |
Position | chr1: 19585140-19585561 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d027991 |
Parent gene annotation |
HB-type transcription factor |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d027991_T001:1 Zm00001d027991_T002:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.256885383 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19585218-19585558(+) 19585388-19585142(-) |
Potential amino acid sequence |
MDEDEDELGPGLGGGRAARSPCGLGEKKRRLALEQVRALERCFETDNKLDPDRKARIARDLALQ PRQVAVWFQNRRARWKTKTLERDFAALRARHDALRADCDALRRDKDALAAEGRSRSWRSRRKRP RRRGRWSPTTRPRWTRTRTSWARAWAAGARRGRRAGSGRRSGAWRWSRCARWSAASRRTTSWTR TARPASRATSRCSRARSPSGSRTAAPAGRPRRSSATSRRCARATTPSAPTATRSAATRTPSPPR GEAEAGVRGGRGPAGAEGGARRRGRDGRGRGRAGPGPGRRARGAVAVRARGEEAAPGAGAGARA GALLRDGQQAGPGPQGPHRARPRAAAAPGRRLVPEPPRPLEDQDARARLRGAARAPRRPPRRLR RAPPRQGRPRRRGEKQKLAFAEEEAPPARKVEPDDEAEMDEDEDELGPGLGGGRAARSPCGLGE KKRRLALEQVRALERCFETDNKLDPDRKARIARDLALQPRQVAVWFQNRRARWKTKTLERDFAA LRARHDALRADCDALRRDKDALAAE(+) MRALRSGSSLLSVSKQRSSARTCSSARRRFFSPSPHGDRAARPPPRPGPSSSSSSSISASSSGS TFRAGGASSSANASFCFSPRRRGRPCRGGARRSRRGGRRGARAAPRSRARASWSSSGRGGSGTR RRPGAAAARGRARCGPCGPGPACCPSRSSAPARAPAPAPGAASSPRARTATAPRARRPGPGPAR PRPRPSRPRRRAPPSAPAGPLPPRTPASASPLGGEGVLVAAERVAVGAEGVVARAQRREVALER LGLPAGAAVLEPDGDLARLQREVARDAGLAVRVQLVVRLEAALQRAHLLQRQAPLLLPEPARRP RRAPAAQARAQLVLVLVHLGLVVGLHLPRRRGLFLRERQLLLLPSAARASLSRRSASQSARRAS WRARSAAKSRSSVLVFQRARRFWNQTATWRGCSARSRAMRALRSGSSLLSVSKQRSSARTCSSA RRRFFSPSPHGDRAARPPPRPGPSSSSSSSISASSSGSTFRAGGASSSANASFCFS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |