Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G25150_circ_g.9 |
ID in PlantcircBase | ath_circ_040341 |
Alias | At_ciR2489 |
Organism | Arabidpsis thaliana |
Position | chr5: 8679275-8679959 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT5G25150 |
Parent gene annotation |
Transcription initiation factor TFIID subunit 5 |
Parent gene strand | + |
Alternative splicing | AT5G25150_circ_g.1 AT5G25150_circ_g.2 AT5G25150_circ_g.3 AT5G25150_circ_g.4 AT5G25150_circ_g.5 AT5G25150_circ_g.6 AT5G25150_circ_g.7 AT5G25150_circ_g.8 AT5G25150_circ_g.10 |
Support reads | 3 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G25150.1:4 AT5G25150.2:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.210376253 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |