Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0254100_circ_g.3 |
ID in PlantcircBase | osa_circ_001136 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 8423064-8423445 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0254100 |
Parent gene annotation |
Similar to CTV.2. (Os01t0254100-01);Similar to Lissencephaly typ e-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol d ehydrogenase-like. (Os01t0254100-02) |
Parent gene strand | - |
Alternative splicing | Os01g0254100_circ_g.2 Os01g0254100_circ_g.4 Os01g0254100_circ_g.5 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0254100-02:2 Os01t0254100-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_011476 |
PMCS | 0.446076745 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8423420-8423096(+) 8423346-8423133(+) 8423396-8423066(-) |
Potential amino acid sequence |
MLWHYIGCGLIYPDIVYMDG*(+) MHGTASSGLVSAVSFCMTRPLFGCQCCGTTLAVASSTLTLYIWMVESSIPIAMILLS*(+) MQNDTADTNPEDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQD NNIIAIGMEDSTIHIYNVRVDEATANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALSKNDSY VMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEATA NVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMP PPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEATANVVPQHWQPNSGLVMQNDTADTNPE DAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS TIHIYNVRVDE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |