Plant Circular RNA Database

Detail information of Csa3G017200_circ_g.2

			
						 General Information
					
						CircRNA Name
						Csa3G017200_circ_g.2
					
						ID in PlantcircBase
						csa_circ_001368
					
						Alias
						Chr3:1734832_1737319
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr3: 1734832-1737319  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI2;Find_circ
					
						Parent gene
						
							Csa3G017200						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							Csa3G017200_circ_g.1 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa3G017200.2:6
Csa3G017200.1:6

General Information
CircRNA Name	Csa3G017200_circ_g.2
ID in PlantcircBase	csa_circ_001368
Alias	Chr3:1734832_1737319
Organism	Cucumis sativus
Position	chrChr3: 1734832-1737319 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	ue-circRNA
Identification method	CIRI2;Find_circ
Parent gene	Csa3G017200
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	Csa3G017200_circ_g.1
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa3G017200.2:6 Csa3G017200.1:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGGGTATAGTTTGCTAAAGTTCCCTTTGTCCTCCATCGAGATCCACAGGCATTGCACAATACTG
GCTTGTCAGGAGGCCCATTACGCCAGAGTGGTGTGCctgaaagctttttgttctggccatcaag
cactctcttgccattcgtaaggctacttgatgcagcagcaaaaccttggacagactctccacta
ctgcattt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1269
Transcript exons: 1734832-1734931,1735025-1735211,1735336-1735439,1735697-
1735769,1736126-1736558,1736948-1737319
CTGAAAGCTTTTTGTTCTGGCCATCAAGCACTCTCTTGCCATTCGTAAGGCTACTTGATGCAGC
AGCAAAACCTTGGACAGACTCTCCACTACTGCATTTCTTGAGTAAATTATATCGTTCCACCCAT
TTTGATTTTGACAAATCCAACAACACCAGCCTACTCAAAATCTTGCAGTCTTCTCTTTTTGCAC
CCGGAAAGGAGAAATCAAAGACTCCTTCAGTGAGCAGCTGCTTAAAAGAATTCAAATTCTCCTT
GAACTGAGGACTTTCAAACATGCTATTCAAGCTGTCTGGAAGCTCTTCAGAATCAACAGAAGGC
AGATACTTCATCAATTCTTGCTGATTTTCACTCGTCAATTGTTTCGTAAACTCTCTGAAGTTTA
GAATGTCAGTTAGATCTATATTACAGAGAGGGGAATTGCGATTTCCAAGTGCTTGCATTCTTTC
TGATTGAGGCCTGTCCCTTTTAATTTGATCATTCAAGAACCCTTGTCCAGTAGAGTGCTTCCTC
CCAATTCCAAGAGTAGAAAAATTTACAAACTTGTTCTGAGTTTCGTAATGTACAGGAAGGATGG
ACGACTCTGAATGAACCTCATTTAAAGAGAATTGCTTATTATCAACTGAAATTGAGCTTGCTTC
TGATTCCTCTTCTCGAGCAATTGAACTTGGATGCCTCATGAGAACGCTTCCATGTCCTATCTCT
ACGGAGACCATCGGAGTTTCATTCTCGAAAAGCAAATCCTCCTCGGAAGATCCAGAAAAGTAAG
ACTGTTGTTCGCGTAAAATGGTGTATAGATCTTTAGTGAGTTTCTCAACTGCAGTAGACTTTGG
ACGACCGACACAGGTCCTCTTTCTAGAAGGCACCATTGCCTCCCACGCCGTTGATTGTGAGGGA
CCTGTCAGATCACTAGCATCTGCGCCACCAAATTGTGCACAGCTCTCAGAGTTCGATATGGCTG
ATCCAGAACTTGATCTATTACTTGTATCTTCATCCACTACCTTGTGAAAGCTCTGAGCATGATC
GGGAAGAACCCCAACCACAAGTCCATTATCTTGATACTGTTTTCTTTTAAGCAGTTTCACTTCT
TTGTTCTTACACATTGACAAGTTCTTCCACCGAGAGATCCTTTTATCCTCAAACTCATCAGGAT
CCGCCCGTGCATGAAGAGGGGTATAGTTTGCTAAAGTTCCCTTTGTCCTCCATCGAGATCCACA
GGCATTGCACAATACTGGCTTGTCAGGAGGCCCATTACGCCAGAGTGGTGTGC
						
					

						Genomic sequence
						
							CTGAAAGCTTTTTGTTCTGGCCATCAAGCACTCTCTTGCCATTCGTAAGGCTACTTGATGCAGC
AGCAAAACCTTGGACAGACTCTCCACTACTGCATTTCTGCAGCCCATAGAAAAGTTTAGTCACT
ATATAGTATCACTCTTCACAATAAGTTCATCAGGAGATAGCCATGATTCCCCTAAGATCTTTTA
CCTTGAGTAAATTATATCGTTCCACCCATTTTGATTTTGACAAATCCAACAACACCAGCCTACT
CAAAATCTTGCAGTCTTCTCTTTTTGCACCCGGAAAGGAGAAATCAAAGACTCCTTCAGTGAGC
AGCTGCTTAAAAGAATTCAAATTCTCCTTGAACTGAGGACTTTCAAACATGCTATTCAAGCTGC
AATACCAAAGAATATAAATGGTAAGCTTTGGATGAATCTGTCTCCTGAATCACCCCATTCACAG
CAGACAAAAACACAGGATTAAGGAAATCCAATATTTCCTGATCAGAGAAGATTAACCTGTCTGG
AAGCTCTTCAGAATCAACAGAAGGCAGATACTTCATCAATTCTTGCTGATTTTCACTCGTCAAT
TGTTTCGTAAACTCTCTGAAGTTTAGAATGTCCTACACCAAACATGGGCCACAATTATGACATG
AATAAAAGAAATTTAAAAAATGGAGATGGTCTATAGTTCAACAAATGCATGTACCAAATAGTAA
AGCAAGCACGTCATACATGCATATATTTCTTCATGATCACAGATTAATAAGATGGTCATTTTGA
CCATATTTCAAGAATTTTCAATTTTGCATTAAATAGATATACAATAAGGTAGCCTTTTGAGCTA
ATGCCAAGTTCAGAACATAAGCATGCAACTTACAGTTAGATCTATATTACAGAGAGGGGAATTG
CGATTTCCAAGTGCTTGCATTCTTTCTGATTGAGGCCTGTCCCTGGGATTACAAGCAGGAAAAA
TATTAGTTCTATAGTGGAGATGTAAATTTTTTTCTAACAAGTACTCTAATTTATAACTATAATC
CAATATCCTCGAGCTAAATTCATATCATATATTGATGAGCAATTTAACAGTGATTGAATTTGCT
GCCACAACCAGCCGACCGTGGCAGAGATAAACAAGTAATCTTGTTCTCTGAAAAAATCACACAT
ATACAAATCAGAAGCTTCACTTTATCCTTGATCAACTTGCGTTTAAAATCCAAGCTACACAATC
AATTTGAACTATCTTTCATGTGATAAACCAGCCAATGCTGAATGAAAATACTTGAACTTAGTTT
GGTCCAAAGTTTACCTTTTAATTTGATCATTCAAGAACCCTTGTCCAGTAGAGTGCTTCCTCCC
AATTCCAAGAGTAGAAAAATTTACAAACTTGTTCTGAGTTTCGTAATGTACAGGAAGGATGGAC
GACTCTGAATGAACCTCATTTAAAGAGAATTGCTTATTATCAACTGAAATTGAGCTTGCTTCTG
ATTCCTCTTCTCGAGCAATTGAACTTGGATGCCTCATGAGAACGCTTCCATGTCCTATCTCTAC
GGAGACCATCGGAGTTTCATTCTCGAAAAGCAAATCCTCCTCGGAAGATCCAGAAAAGTAAGAC
TGTTGTTCGCGTAAAATGGTGTATAGATCTTTAGTGAGTTTCTCAACTGCAGTAGACTTTGGAC
GACCGACACAGGTCCTCTTTCTAGAAGGCACCATTGCCTCCCACGCCGTTGATTGTGAGGGACC
TGGAGAAAAAATAGAAATAAGCAAATGGAAAAAAAAAAAAAAAGCAGACCTAAATGTTTTGTTC
AGATAAAATTTCTGCAATGAAGATTTTATACGGGACAAAAGAAGTTATTGCACAAAGAAAAAAT
ATGAAATGTTCTAGCAACAAGTGTCTGAATAAAACTATTAAATTTCTATTCCTTTCTGACTGTT
CTACCCTAATTTCAGCCAACACACAAACTAGTTGTTCAAGAACGATAATTAAAACATTTCTCAT
CTCATTTTCAATCAGAATCTTCCATCAAATTTAGTTTCTAACAGAAGCATTGCTTATGATTTGA
CCAATGCAAGTATTTTAAATTCTCGATATTCTATCTTTTATTATTTCTCAATTGTATAATTGAC
CAACCTGTCAGATCACTAGCATCTGCGCCACCAAATTGTGCACAGCTCTCAGAGTTCGATATGG
CTGATCCAGAACTTGATCTATTACTTGTATCTTCATCCACTACCTTGTGAAAGCTCTGAGCATG
ATCGGGAAGAACCCCAACCACAAGTCCATTATCTTGATACTGTTTTCTTTTAAGCAGTTTCACT
TCTTTGTTCTTACACATTGACAAGTTCTTCCACCGAGAGATCCTTTTATCCTCAAACTCATCAG
GATCCGCCCGTGCATGAAGAGGGGTATAGTTTGCTAAAGTTCCCTTTGTCCTCCATCGAGATCC
ACAGGCATTGCACAATACTGGCTTGTCAGGAGGCCCATTACGCCAGAGTGGTGTGC
						
					

			
		

Sequences
Splice junction sequence	GGGGTATAGTTTGCTAAAGTTCCCTTTGTCCTCCATCGAGATCCACAGGCATTGCACAATACTG GCTTGTCAGGAGGCCCATTACGCCAGAGTGGTGTGCctgaaagctttttgttctggccatcaag cactctcttgccattcgtaaggctacttgatgcagcagcaaaaccttggacagactctccacta ctgcattt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1269 Transcript exons: 1734832-1734931,1735025-1735211,1735336-1735439,1735697- 1735769,1736126-1736558,1736948-1737319 CTGAAAGCTTTTTGTTCTGGCCATCAAGCACTCTCTTGCCATTCGTAAGGCTACTTGATGCAGC AGCAAAACCTTGGACAGACTCTCCACTACTGCATTTCTTGAGTAAATTATATCGTTCCACCCAT TTTGATTTTGACAAATCCAACAACACCAGCCTACTCAAAATCTTGCAGTCTTCTCTTTTTGCAC CCGGAAAGGAGAAATCAAAGACTCCTTCAGTGAGCAGCTGCTTAAAAGAATTCAAATTCTCCTT GAACTGAGGACTTTCAAACATGCTATTCAAGCTGTCTGGAAGCTCTTCAGAATCAACAGAAGGC AGATACTTCATCAATTCTTGCTGATTTTCACTCGTCAATTGTTTCGTAAACTCTCTGAAGTTTA GAATGTCAGTTAGATCTATATTACAGAGAGGGGAATTGCGATTTCCAAGTGCTTGCATTCTTTC TGATTGAGGCCTGTCCCTTTTAATTTGATCATTCAAGAACCCTTGTCCAGTAGAGTGCTTCCTC CCAATTCCAAGAGTAGAAAAATTTACAAACTTGTTCTGAGTTTCGTAATGTACAGGAAGGATGG ACGACTCTGAATGAACCTCATTTAAAGAGAATTGCTTATTATCAACTGAAATTGAGCTTGCTTC TGATTCCTCTTCTCGAGCAATTGAACTTGGATGCCTCATGAGAACGCTTCCATGTCCTATCTCT ACGGAGACCATCGGAGTTTCATTCTCGAAAAGCAAATCCTCCTCGGAAGATCCAGAAAAGTAAG ACTGTTGTTCGCGTAAAATGGTGTATAGATCTTTAGTGAGTTTCTCAACTGCAGTAGACTTTGG ACGACCGACACAGGTCCTCTTTCTAGAAGGCACCATTGCCTCCCACGCCGTTGATTGTGAGGGA CCTGTCAGATCACTAGCATCTGCGCCACCAAATTGTGCACAGCTCTCAGAGTTCGATATGGCTG ATCCAGAACTTGATCTATTACTTGTATCTTCATCCACTACCTTGTGAAAGCTCTGAGCATGATC GGGAAGAACCCCAACCACAAGTCCATTATCTTGATACTGTTTTCTTTTAAGCAGTTTCACTTCT TTGTTCTTACACATTGACAAGTTCTTCCACCGAGAGATCCTTTTATCCTCAAACTCATCAGGAT CCGCCCGTGCATGAAGAGGGGTATAGTTTGCTAAAGTTCCCTTTGTCCTCCATCGAGATCCACA GGCATTGCACAATACTGGCTTGTCAGGAGGCCCATTACGCCAGAGTGGTGTGC
Genomic sequence	CTGAAAGCTTTTTGTTCTGGCCATCAAGCACTCTCTTGCCATTCGTAAGGCTACTTGATGCAGC AGCAAAACCTTGGACAGACTCTCCACTACTGCATTTCTGCAGCCCATAGAAAAGTTTAGTCACT ATATAGTATCACTCTTCACAATAAGTTCATCAGGAGATAGCCATGATTCCCCTAAGATCTTTTA CCTTGAGTAAATTATATCGTTCCACCCATTTTGATTTTGACAAATCCAACAACACCAGCCTACT CAAAATCTTGCAGTCTTCTCTTTTTGCACCCGGAAAGGAGAAATCAAAGACTCCTTCAGTGAGC AGCTGCTTAAAAGAATTCAAATTCTCCTTGAACTGAGGACTTTCAAACATGCTATTCAAGCTGC AATACCAAAGAATATAAATGGTAAGCTTTGGATGAATCTGTCTCCTGAATCACCCCATTCACAG CAGACAAAAACACAGGATTAAGGAAATCCAATATTTCCTGATCAGAGAAGATTAACCTGTCTGG AAGCTCTTCAGAATCAACAGAAGGCAGATACTTCATCAATTCTTGCTGATTTTCACTCGTCAAT TGTTTCGTAAACTCTCTGAAGTTTAGAATGTCCTACACCAAACATGGGCCACAATTATGACATG AATAAAAGAAATTTAAAAAATGGAGATGGTCTATAGTTCAACAAATGCATGTACCAAATAGTAA AGCAAGCACGTCATACATGCATATATTTCTTCATGATCACAGATTAATAAGATGGTCATTTTGA CCATATTTCAAGAATTTTCAATTTTGCATTAAATAGATATACAATAAGGTAGCCTTTTGAGCTA ATGCCAAGTTCAGAACATAAGCATGCAACTTACAGTTAGATCTATATTACAGAGAGGGGAATTG CGATTTCCAAGTGCTTGCATTCTTTCTGATTGAGGCCTGTCCCTGGGATTACAAGCAGGAAAAA TATTAGTTCTATAGTGGAGATGTAAATTTTTTTCTAACAAGTACTCTAATTTATAACTATAATC CAATATCCTCGAGCTAAATTCATATCATATATTGATGAGCAATTTAACAGTGATTGAATTTGCT GCCACAACCAGCCGACCGTGGCAGAGATAAACAAGTAATCTTGTTCTCTGAAAAAATCACACAT ATACAAATCAGAAGCTTCACTTTATCCTTGATCAACTTGCGTTTAAAATCCAAGCTACACAATC AATTTGAACTATCTTTCATGTGATAAACCAGCCAATGCTGAATGAAAATACTTGAACTTAGTTT GGTCCAAAGTTTACCTTTTAATTTGATCATTCAAGAACCCTTGTCCAGTAGAGTGCTTCCTCCC AATTCCAAGAGTAGAAAAATTTACAAACTTGTTCTGAGTTTCGTAATGTACAGGAAGGATGGAC GACTCTGAATGAACCTCATTTAAAGAGAATTGCTTATTATCAACTGAAATTGAGCTTGCTTCTG ATTCCTCTTCTCGAGCAATTGAACTTGGATGCCTCATGAGAACGCTTCCATGTCCTATCTCTAC GGAGACCATCGGAGTTTCATTCTCGAAAAGCAAATCCTCCTCGGAAGATCCAGAAAAGTAAGAC TGTTGTTCGCGTAAAATGGTGTATAGATCTTTAGTGAGTTTCTCAACTGCAGTAGACTTTGGAC GACCGACACAGGTCCTCTTTCTAGAAGGCACCATTGCCTCCCACGCCGTTGATTGTGAGGGACC TGGAGAAAAAATAGAAATAAGCAAATGGAAAAAAAAAAAAAAAGCAGACCTAAATGTTTTGTTC AGATAAAATTTCTGCAATGAAGATTTTATACGGGACAAAAGAAGTTATTGCACAAAGAAAAAAT ATGAAATGTTCTAGCAACAAGTGTCTGAATAAAACTATTAAATTTCTATTCCTTTCTGACTGTT CTACCCTAATTTCAGCCAACACACAAACTAGTTGTTCAAGAACGATAATTAAAACATTTCTCAT CTCATTTTCAATCAGAATCTTCCATCAAATTTAGTTTCTAACAGAAGCATTGCTTATGATTTGA CCAATGCAAGTATTTTAAATTCTCGATATTCTATCTTTTATTATTTCTCAATTGTATAATTGAC CAACCTGTCAGATCACTAGCATCTGCGCCACCAAATTGTGCACAGCTCTCAGAGTTCGATATGG CTGATCCAGAACTTGATCTATTACTTGTATCTTCATCCACTACCTTGTGAAAGCTCTGAGCATG ATCGGGAAGAACCCCAACCACAAGTCCATTATCTTGATACTGTTTTCTTTTAAGCAGTTTCACT TCTTTGTTCTTACACATTGACAAGTTCTTCCACCGAGAGATCCTTTTATCCTCAAACTCATCAG GATCCGCCCGTGCATGAAGAGGGGTATAGTTTGCTAAAGTTCCCTTTGTCCTCCATCGAGATCC ACAGGCATTGCACAATACTGGCTTGTCAGGAGGCCCATTACGCCAGAGTGGTGTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						1.120115514

Conservation Information
Conserved circRNAs	NA
PMCS	1.120115514

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1734875-1737235(-)
1737154-1734834(-)
						
					

						Potential amino acid sequence
						
							MARECLMARTKSFQAHHSGVMGLLTSQYCAMPVDLDGGQREL*
MCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADA
SDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENET
PMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFS
TLGIGRKHSTGQGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQE
LMKYLPSVDSEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLD
LSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSGTPLWRNGPPDKPVLCN
ACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVL
PDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVG
RPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEE
SEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTGQGFLNDQIKRDRPQ
SERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDSEELPDSLNSMFESPQ
FKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGF
AAASSSLTNGKRVLDGQNKKLSGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPD
EFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAI
SNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYF
SGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSIL
PVHYETQNKFVNFSTLGIGRKHSTGQGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNF
REFTKQLTSENQQELMKYLPSVDSEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAK
REDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSGTP
LWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLK
RKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTA
WEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGS
VLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTG
QGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDSE
ELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYN
LLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLS
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1734875-1737235(-) 1737154-1734834(-)
Potential amino acid sequence	MARECLMARTKSFQAHHSGVMGLLTSQYCAMPVDLDGGQREL* MCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADA SDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENET PMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFS TLGIGRKHSTGQGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQE LMKYLPSVDSEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLD LSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSGTPLWRNGPPDKPVLCN ACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVL PDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVG RPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEE SEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTGQGFLNDQIKRDRPQ SERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDSEELPDSLNSMFESPQ FKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGF AAASSSLTNGKRVLDGQNKKLSGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPD EFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAI SNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYF SGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSIL PVHYETQNKFVNFSTLGIGRKHSTGQGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNF REFTKQLTSENQQELMKYLPSVDSEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAK REDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSGTP LWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLK RKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTA WEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGS VLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTG QGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDSE ELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYN LLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLS
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhu et al., 2019;He et al., 2020

circRNA

Detail information of Csa3G017200_circ_g.2

Address

Any questions?

Supported by