Detail information of BGIOSGA015083_circ_g.1


General Information
CircRNA Name BGIOSGA015083_circ_g.1
ID in PlantcircBase osi_circ_005466
Alias 4:19396171|19396732
Organism Oryza sativa ssp. indica
Position chr4: 19396171-19396732  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015083
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015083_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015083-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCCTTCCCCTCGGGGGCGTCCGGCTTCAGCATCAGCAGTGCGCACCGCAGCGCCATGAAGAA
GAGGGCCTGGATCTCGATTGGGTACCCGTACACGCCctggccaggatccgccattgtggtagct
ccaccgggtgttcttggggtcgcacccggtgacgaactcccactcgtgtgattcgatcgccggg
aagctgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGCCAGGATCCGCCATTGTGGTAGCTCCACCGGGTGTTCTTGGGGTCGCACCCGGTGACGAA
CTCCCACTCGTGTGATTCGATCGCCGGGAAGCTGATCTTGAGCGGCATCTCCCCGATGAGGTCC
TCCCACCGCTCCTCGATGAGGTCCATGATCGCCGCCGCCTGCTCGGGCGTCGCCATGGACGCAA
GGATGGCGACGAAGTTGCCCAGTGCGAACCATCGGAAGTCCATCCGGGCGGGGCTGACGTTGCC
GACGAAGTAGCCGCCGCGGCTGGGCATGAAGTCGAACACCCAGTCCGGGATGGACTCCGGGATG
ACGTTGAACTTGTTGACCGCAGTGTGGGAGTACTCCTCGGTGCGGTAGCGGTAGACATCGTTGA
GCTGCTGGAAGTCGAGCCAGAAGTAGGACCGCATGTGGTAGGTGAGTGCGTGGAGCCGTGTCGC
CACGCGGTCCATCGTCTCCTTCCCCTCGGGGGCGTCCGGCTTCAGCATCAGCAGTGCGCACCGC
AGCGCCATGAAGAAGAGGGCCTGGATCTCGATTGGGTACCCGTACACGCC
Conservation Information
Conserved circRNAs osa_circ_023872*
PMCS
Functional Information
Coding potential Y
Potential coding position 19396692-19396668(-)
19396550-19396668(-)
19396396-19396668(-)
19396690-19396246(+)
Potential amino acid sequence MALRCALLMLKPDAPEGKETMDRVATRLHALTYHMRSYFWLDFQQLNDVYRYRTEEYSHTAVNK
FNVIPESIPDWVFDFMPSRGGYFVGNVSPARMDFRWFALGNFVAILASMATPEQAAAIMDLIEE
RWEDLIGEMPLKISFPAIESHEWEFVTGCDPKNTRWSYHNGGSWPGRVRVPNRDPGPLLHGAAV
RTADAEAGRPRGEGDDGPRGDTAPRTHLPHAVLLLARLPAAQRCLPLPHRGVLPHCGQQVQRHP
GVHPGLGVRLHAQPRRLLRRQRQPRPDGLPMVRTGQLRRHPCVHGDARAGGGDHGPHRGAVGGP
HRGDAAQDQLPGDRITRVGVRHRVRPQEHPVELPQWRILARACTGTQSRSRPSSSWRCGAHC*(
-)
MSTATAPRSTPTLRSTSSTSSRSPSRTGCSTSCPAAAATSSATSAPPGWTSDGSHWATSSPSLR
PWRRPSRRRRSWTSSRSGGRTSSGRCRSRSASRRSNHTSGSSSPGATPRTPGGATTMADPGQGV
YGYPIEIQALFFMALRCALLMLKPDAPEGKETMDRVATRLHALTYHMRSYFWLDFQQLNDVYRY
RTEEYSHTAVNKFNVIPESIPDWVFDFMPSRGGYFVGNVSPARMDFRWFALGNFVAILASMATP
EQAAAIMDLIEERWEDLIGEMPLKISFPAIESHEWEFVTGCDPKNTRWSYHNGGSWPGRVRVPN
RDPGPLLHGAAVRTADAEAGRPRGEGDDGPRGDTAPRTHLPHAVLLLARLPAAQRCLPLPHRGV
LPHCGQQVQRHPGVHPGLGVRLHAQPRRLLRRQRQPRPDGLPMVRTGQLRRHPCVHGDARAGGG
DHGPHRGAVGGPHRGDAAQDQLPGDRITRVGVRHRVRPQEHPVELPQWRILARACTGTQSRSRP
SSSWRCGAHC*(-)
MVRTGQLRRHPCVHGDARAGGGDHGPHRGAVGGPHRGDAAQDQLPGDRITRVGVRHRVRPQEHP
VELPQWRILARACTGTQSRSRPSSSWRCGAHC*(-)
MKKRAWISIGYPYTPWPGSAIVVAPPGVLGVAPGDELPLV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021