Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA015083_circ_g.1 |
ID in PlantcircBase | osi_circ_005466 |
Alias | 4:19396171|19396732 |
Organism | Oryza sativa ssp. indica |
Position | chr4: 19396171-19396732 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA015083 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA015083_circ_g.2 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA015083-TA:1 |
Conservation Information | |
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Conserved circRNAs | osa_circ_023872* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19396692-19396668(-) 19396550-19396668(-) 19396396-19396668(-) 19396690-19396246(+) |
Potential amino acid sequence |
MALRCALLMLKPDAPEGKETMDRVATRLHALTYHMRSYFWLDFQQLNDVYRYRTEEYSHTAVNK FNVIPESIPDWVFDFMPSRGGYFVGNVSPARMDFRWFALGNFVAILASMATPEQAAAIMDLIEE RWEDLIGEMPLKISFPAIESHEWEFVTGCDPKNTRWSYHNGGSWPGRVRVPNRDPGPLLHGAAV RTADAEAGRPRGEGDDGPRGDTAPRTHLPHAVLLLARLPAAQRCLPLPHRGVLPHCGQQVQRHP GVHPGLGVRLHAQPRRLLRRQRQPRPDGLPMVRTGQLRRHPCVHGDARAGGGDHGPHRGAVGGP HRGDAAQDQLPGDRITRVGVRHRVRPQEHPVELPQWRILARACTGTQSRSRPSSSWRCGAHC*( -) MSTATAPRSTPTLRSTSSTSSRSPSRTGCSTSCPAAAATSSATSAPPGWTSDGSHWATSSPSLR PWRRPSRRRRSWTSSRSGGRTSSGRCRSRSASRRSNHTSGSSSPGATPRTPGGATTMADPGQGV YGYPIEIQALFFMALRCALLMLKPDAPEGKETMDRVATRLHALTYHMRSYFWLDFQQLNDVYRY RTEEYSHTAVNKFNVIPESIPDWVFDFMPSRGGYFVGNVSPARMDFRWFALGNFVAILASMATP EQAAAIMDLIEERWEDLIGEMPLKISFPAIESHEWEFVTGCDPKNTRWSYHNGGSWPGRVRVPN RDPGPLLHGAAVRTADAEAGRPRGEGDDGPRGDTAPRTHLPHAVLLLARLPAAQRCLPLPHRGV LPHCGQQVQRHPGVHPGLGVRLHAQPRRLLRRQRQPRPDGLPMVRTGQLRRHPCVHGDARAGGG DHGPHRGAVGGPHRGDAAQDQLPGDRITRVGVRHRVRPQEHPVELPQWRILARACTGTQSRSRP SSSWRCGAHC*(-) MVRTGQLRRHPCVHGDARAGGGDHGPHRGAVGGPHRGDAAQDQLPGDRITRVGVRHRVRPQEHP VELPQWRILARACTGTQSRSRPSSSWRCGAHC*(-) MKKRAWISIGYPYTPWPGSAIVVAPPGVLGVAPGDELPLV*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |