Detail information of BGIOSGA015084_circ_g.1


General Information
CircRNA Name BGIOSGA015084_circ_g.1
ID in PlantcircBase osi_circ_014372
Alias Chr04:21910068_21910950(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19374205-19375085  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA015084
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015084_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA015084-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATGTTCAAGTCAAAAGGATACCTTCTCAAGAAACACCAAAAATGGATATTGACCAGCTTTCA
AGCTGTGGTTCATAGATGATGGGTGTATGTGAACTTcctctggctttcttatcaattctttcag
aacagcatcaagtgttacgcgaagttgcttgaataggacagcagtctgtgcagcagctgccagc
cttaacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTGGCTTTCTTATCAATTCTTTCAGAACAGCATCAAGTGTTACGCGAAGTTGCTTGAATAG
GACAGCAGTCTGTGCAGCAGCTGCCAGCCTTAACCATCCATCTATGATAACCACTCCTGTCTGT
TAAAAAAAAAGACAATAAGTTTCCCCACTGATTACAATTAGCTAAAGATACCATTTAATAGTTA
ATGCACAAAAATATACACGATAAGTTAATAACCAACAGTTTCTAAATGAATTTCACTTAAACAA
GAACATGGGAGGAAAAATTGCCTAACTGATTTAAACAGATCGATGTGAAACTGAAAGCCCTAAA
ATTGATGCAATTTTTCACTTTTCACATATATTACTCACAAAAACTAATAATATATACTGAGTAG
TTTCTCTTTTGATTGACAAGTGCCAATATCTAACATGTGATGTGAGCACAAGAAAAGGCACAGG
CACTGCATCCCTTATAGAAATAAGAGGATGGGGGTTCGGTATCTTAAGCCTAATAGTCTAGGAT
TGGATAGAGACCACAATACCTGATGTTGGATAACCATGGTACCACCAAACAGAAGGAGCGAGTA
AGGAGAAATAACACTAGTATCACGTAGAAATACCTTACTTGTCTCAACCTGAATATAGGGAATA
GAGAGAATCAAAAGTATCAGAGATTCAAAAATACAATATTTTTTCCTCAGATCACCATCGTAAA
TACTTTTTTATATGGTATATCATTCCACATTTCTACAAGTGTATCTTATGCAACATAATGATAA
TGGTGCACCCCATTCATGTTCAAGTCAAAAGGATACCTTCTCAAGAAACACCAAAAATGGATAT
TGACCAGCTTTCAAGCTGTGGTTCATAGATGATGGGTGTATGTGAACTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021