Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G12420_circ_g.2 |
ID in PlantcircBase | ath_circ_002251 |
Alias | Ath_circ_FC5218 |
Organism | Arabidpsis thaliana |
Position | chr1: 4227323-4227895 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G12420 |
Parent gene annotation |
ACT domain-containing protein ACR8 |
Parent gene strand | - |
Alternative splicing | AT1G12420_circ_g.1 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G12420.2:1 AT1G12420.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.34063818 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4227800-4227325(-) |
Potential amino acid sequence |
MFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLNGDNDVNS AAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHERSPMVVVTVQNWAERGYSVVNVHCRDRT KLLFDVVCTLTDMEYAVFHATINTAEDQAHLSIETVYYGENIEVNGLTALELTGTDRIGLLSEM FAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLNGDNDVNSA AKTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHERSPMVVVTVQNWAERGYSVVNVHCRDRTK LLFDVVCTLTDMEYAVFHATINTAEDQAHLSIETVYYGENIEVNGLTALELTGTDRIGLLSEMF AVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLNGDNDVNSAA KTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHERSPMVVVTVQNWAERGYSVVNVHCRDRTKL LFDVVCTLTDMEYAVFHATINTAEDQAHLSIETVYYGENIEVNGLTALELTGTDRIGLLSEMFA VLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLNGDNDVNSAAK TCVTVDSMMHIERRLHQLMFEDRDYERRSKKHERSPMVVVTVQNWAERGYSVVNVHCRDRTKLL FDVVCTLTDMEYAVFHATINTAEDQAHL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |