Detail information of orai.009G329800_circ_g.1


General Information
CircRNA Name orai.009G329800_circ_g.1
ID in PlantcircBase gra_circ_001010
Alias Chr09:33830937|33835834
Organism Gossypium raimondii
Position chrChr09: 33830937-33835834  JBrowse»
Reference genome Graimondii_221
Type   ue-circRNA
Identification method CIRI
Parent gene Gorai.009G329800
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.009G329800.5:10
Gorai.009G329800.3:10
Gorai.009G329800.6:9
Gorai.009G329800.1:10
Gorai.009G329800.2:10
Gorai.009G329800.4:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAATTTAATCAACCTCTTCGACAGCCTTTTCTCTTAGCCTTTCAGACATCCTTAATGCCTTAA
TTTCGGCTTGTGCTTCTCCCAATTCTCTATCTTTATctatgcaagtccttgcggcagctccaat
tagaattttgttgtcattgagtgctgcgtgttaacccacttcgagatacgtttctgcataagtt
tgagaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATGCAAGTCCTTGCGGCAGCTCCAATTAGAATTTTGTTGTCATTGAGTGCTGCGTGTTAACC
CACTTCGAGATACGTTTCTGCATAAGTTTGAGAAATTTTATGTTACATTGAATGTCAATGTTTG
GAATATACTAAACATGAAATCAAAGGAAAACAAGCTAGCATATTTGCATTTATCGATTACAGGC
CTTGACTCTTGGTCAAGCAAGTCACAGAAAAACAATTAGGTGGAATATCAAAAAAGAACTAACA
AGTAGATTACTTTTGAAGTGATCACTACTACTTTTAGTACCAAATTACAATGAATCCTAACAGA
TCAAATGACACTGATTCACATGTTCATTCATGGTCTTCAAACCATCTACAGATTGAAGGGTGCA
CTAACGTTGATGGGGTAGCTGCAAAACTGACAGATCTCTACTTCATGCTATTAAACATTTGTGG
GAGGAAATTTTGTAAGTAGGAGAAGCAAGAAACAAAAAATGCAGTAGCTCAGAGTGGAGCAGAA
GCTGAATTTAGAGCAGCAACTCTTGGCTGTTACTCCGACTTGGGTGTTTTATTTTAATAAGAAT
ATGTTCAAATTTTTTAGTATCCCCAGACCCATGTCCGAATATGTGTCGGGTATAGATAGTTCAA
GAAAAATTAAGTCTAAGCAATTTAGACTTGGAATATGTAATTTGTTATGGCTGGAGAAATTACC
AAGAGGCCTAAAGGTTCCTAACTCCCCTCCTGTGACTGTACCGTGACAACAAAGCTACTATCAG
TATAGCTCGTAGGTTGGTTGGACATGACAGGACAAAGCACATTGAAGTATAACGATTCTTCATC
AAATAAAAGCTAGAGGGACGTGTATGCTAGCCATACATCCCAACTCAAGAACGATTATTTTATT
GAATCAACTCAAGAACGATTATTTTATGGAATCAACTCAAGAACAATTATTAGATGTTCTAGAA
ACGGGAATCTGCAAGGGACAGTTTGATTACTCGACTTGCAAACTGGATATGGAAGACATCAAAA
CCTGCCAGGGGGAGAGTGTTGGAAGATTTAGATAAAAATCCCTGAAAATCAGGGATTTGATTAT
CTTATAAATATTTGGCTTTTAAACCAAATCTGTAGAATATATTGAGGATTTACTTCTATTCTCC
AAATATTGTTACTCTAGTAGTGAGACTAATTTTAGCTTGAAGCATTATAGGAAAATGAGAATTA
TTAAAAGCTAAACAACTATCAGTGGAAAAAAAGCACCTTCCGGTAAGCAGCTGAGCAGCAGACC
CCTTGGAGTTACCAAACCGCTTGGCCCGATTCTCATGTTCTTTCTTGACACGCATGGCAGCAAC
CTCTTTCTCCATAGTGGCTACTTCACGTCGCATCTTTTTAGCCTCAACTTCCATTGCCTTTGTC
AATGTTTCCACCTTCTTGGCAAGCATCTGAAAAATACATGGATTACTAGAGCATTTAACTAGAA
TGATAAATCAATATGATGTTAGATCGAAAGAACACAAGCATCAACCTCAATTGCCTCATCCTTA
TCCTTAAGGCTTAGATCTTTCTCGTGACCAGCTTTCCTCAAAGCTATGACCTCTTTTTGCAACA
AATCATACAATACTCCAGGTACATTATCCTCTGCATCCACTGCCAGGAAATTATTTGGTTTTTC
ATCACTTGGTGCCTCAGCCTTTCCCTCAGAAGGTTGGTTGAGTGAACTATTTGAGTCTGTTCCA
TTTAAAAGCACTTTTGTCACATCTAACGATCTTGTGCCTCCATCAAATGACTTGGATGTTCCTT
TAGCATGCTTCAATACTGTACTAGACGAGAAAGATGATCTCAATTGAAAGCTTGGTGATCTCTT
GGATAAAACCCCACTGGGGGTAAGTTTTGAGAAGTTATCAGCTCCACCAAGAGACTGACGCCTA
GAACGCCCATTGCTCACACTTCTTCCATCTGATGTACTGCGACTAACACTGTTAGAAGATCCTC
TCAAGCTATCTTCTAGAACTCTGAGCCGCAATAGATATTTCTCCTAGCAAATCAAAATAAAAGC
TCTTATTCCAAACCAGCGGCATCAAGAAAGAGAACAGAGTGATAATTGTCACAATCAGATTATT
ACTTTCAACTGTGCTTCAGATTTTGCAGTTCGCTCAGTTATAGCAAGCTTGTCACGAAGTTGCT
GCATTTCTCCCTATAAGAAATAAAGTCTGCAGTAAGAGAAATTACTAATTTAAGTGCCTATAGA
TTTATTTGATGGAGAAACTATCCACAAAAACCTGCAAGCATCTCCGCTCTTCAAGCCATTGTTT
TACAGGCATCACTTTGTCATTAGCATCTTTCCACTCATTTGCTACAACTGTGGCCACTCTATTA
GCACTTACTTTTGCACGTGCCAGCTCTCGATCAAGTGTTTTTCTTTCCTCCTAAGAAACACCGA
AATAATCATTCATTTTGGGAAGAGCTTTAAGAGTATATCGCCAGAAAGTTATCAGGAAAGCTTG
GACAGTTAAAAGCTGAGCACATTACATTCATCTCCTGAACTTTCCTCTGGTAGTCCCTCACTGC
ATTTGCAGCAGCACCACCAGCAAGAACAGCCTCTTCCAGCTCCCTAACTGTTTGCATAAGCTTT
TCAACCTCTGCAACCTTTTGGCGATGCATTTTGTCCAAAATTTTGTTTTCTTCCTACCATAGAC
AGGTCATAGATATGTTACTTTCTTGAACATATGGCGTACTGAGTGAGCAAAAACCTATATACCC
AACTCTTGATGCACCTGAAACAGGAAACGCAAAGAATGATGGGAATACCTGGCAAATTTCTATC
TGCTTCATCAATTCCTGGTTTTTATTTTGGAGATCATCTACCATGGAAGCTTTCGCCAATGCAA
ACTCTACAGTTCTTTCAGCATCAATTAAAGCTGCTTCTTTTGATTTAGTTAGACGATCGAGAGC
TTTGTTATCATCTTGAAGCTTTGCAATCTGCAGAGAACCAAAAAAAAAACCTAATCAGTGGGGG
AATAACCTATCTCATATAAGTTTATAAAACATTCTCCAATTCCCTTGGTGAGACAGAACCAGTT
GTTGAATTGTCCCAAGAAATACCTCTTGCCGAGCAAGCTTCAGCTCAGCCTCCAAGGGTGCAAG
AATTGCTTCAATTGGAGGCATATCATCGTCCTTTTGAGCAGCATGAACCCTCCGCAGAGTGGCC
TCAGCTGCAAACTGAGCAGCCATGGATGCCTTCTTCTCATCATTTATTTTCTTGATTTCTAGGT
TCTGGAGAACATGTTTCACAAATTAATATAACAGAACAACAGAAAAATAATATGGCTTGAAGAA
ATTTTTGAAATCATACCTTGCTTTCCAGAAGAGATTCTGTCAGTTTAAGCTTCTCCGCCATTTT
TGAGAGATCATCAGTGAGCTATGATACAAAAGAAAATAAATTTAAAATAAAGTCAGTCTCCATC
TCAATTACAAAAGGTGTTACAAAAATTCTGGGTCAGAAGACAGATATAAAACCAAATTTCAGAC
GTGTCCAACACCTTATATTATATGTTGAATTACTACCGAAGAAGAAAAAAAAAGATAAACTAAA
GCCTTTGATGCAAGAGCGTTGCCAAGTGTTGAAGACCTCTAAAATACATAAAGATCAGGAATTC
TCCCGAACAAGACAAGATCATTTGCAATACGCAGAAATAGCAAGTCATAAAACAAAAAGGACAA
TAGATCATTAGAATCTCTCAGCATGAAAGCCAAAATTTCAATCATGAGATCACATGCTACCCTA
AACCTCATCAAACAATTAAATTTAGAAAGAAAAAAACATATATAGAAAAAAATTTTGTTAGTTA
TAGGAAGAAGATAACATGCATGGAAGAACATTTGATCTAATAAAAGAACTAACATAAGTTTTAG
ATTGCACGTAGCACGAAATCTTGTAACAGCTTTAATAGTGACAAGTCAAACAACATTAGAAGAC
AGGACAAAGCAACTGAACGATGCAAAACCTTAAATTAATTTGCCATAATATGCAATCTTAAAAT
GAAAAGACACAGATACTACAAGGAATCTGACAAAGAAGTCTGATAAAGCATTAAAAAATTATTC
ATACTGCTAGATGAGACGGCCCATCACTGACTTTCTAAAATTACTAACCAATAACAATGATGAA
AAACTCTACCAAACATGACTTCAAGAGTAAAAAGCACAGTAAATTGTTCACCCAAAGACCAGAA
AGCCAACTTTCCAACCATACAAAGAACAGAGATTTGCTATCAGCAATGTAGACATAGGCAGGCA
GAGCAAATTTACATATAAAGTTTACAGGATCTACTTCAGTAAAACAACAATATACAGTGAAATA
CAAACAGCCTATGTTACTGGGACACGAAATGAGTGTCAGATAGGAGTAGCATTCGACATGGGTA
TGTTAGTTTTCTACGTATTTGGAGAGTCCGTGGAGCGTCATCATCTCCATAGACCAATGTATGG
ATACGCATCAGCACTAATAATTCATGAAAATTGAAGACTGGAGAAACATAGCAAACAGCCCCTT
CTTCCATCAGTTTCAGCAGATTATCCATCACTAAACTTCAAACAAATTGAATTCTTTTTCCCCA
GAAATCAAACATCCAATAAAGGGGAGGAAAAGCAGTGAACTTTCCACTAAGAACAGACATAATT
TAACGAAAAATAAGAAAATTTCAAAACATTTCGAAATAAATTATTACTTTTAACTACCAGTATT
ACTAAGGCGTTTTCACAATTTAATTATTTTATTAAATTAAAACCTAATAATTAATAATAATAAT
AATTTAATCAACCTCTTCGACAGCCTTTTCTCTTAGCCTTTCAGACATCCTTAATGCCTTAATT
TCGGCTTGTGCTTCTCCCAATTCTCTATCTTTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.135518006
Functional Information
Coding potential Y
Potential coding position 33834158-33830995(+)
Potential amino acid sequence MDAFFSSFIFLISRFLLSRRDSVSLSFSAIFERSSVSSSTAFSLSLSDILNALISACASPNSLS
LSMQVLAAAPIRILLSLSAAC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b