Detail information of Os06g0685700_circ_g.2


General Information
CircRNA Name Os06g0685700_circ_g.2
ID in PlantcircBase osa_circ_032088
Alias Os_ciR10574
Organism Oryza sativa
Position chr6: 28588020-28588164  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0685700
Parent gene annotation Similar to Auxin response factor 16. (Os06t0685700-01)
Parent gene strand +
Alternative splicing Os06g0685700_circ_g.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0685700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCA
AGGATCAGcattcgaggtcgtctactacccgagggcgagcacgccggagttctgcgtgaaggcc
ggggcggtcagagcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGT
CAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAG
GACTCATCAAGGATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.394562241
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015