Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038258_circ_g.1 |
ID in PlantcircBase | zma_circ_009124 |
Alias | Zm06circ00087 |
Organism | Zea mays |
Position | chr6: 152494187-152494973 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d038258 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d038258_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.137555845 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
152494245-152494189(-) 152494899-152494957(-) |
Potential amino acid sequence |
MSCDSQSKTSVSSSSRAHTVLTNGIEVKLQRNALSVIEPPTGNEDDDKFDCENLRWNSSDLVSD DAQSPKPQRSRSRQHRGFHRKSFSRSMSCDSQSKTSVSSSSRAHTVLTNGIEVKLQRNALSVIE PPTGNEDDDKFDCENLRWNSSDLVSDDAQSPKPQRSRSRQHRGFHRKSFSRSMSCDSQSKTSVS SSSRAHTVLTNGIEVKLQRNALSVIEPPTGNEDDDKFDCENLRWNSSDLVSDDAQSPKPQRSRS RQHRGFHRKSFSRSMSCDSQSKTSVSSSSRAHT(-) MMINLIVKTCGGIVQTWSPMMHNHQSHKGQGAGSIGVSTENPLAVQCHVTPNLRRLFHLPRELT RYLLME*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |