Detail information of BGIOSGA029168_circ_igg.2


General Information
CircRNA Name BGIOSGA029168_circ_igg.2
ID in PlantcircBase osi_circ_018158
Alias Chr08:29081032_29085826(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 29639135-29643931  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA029168_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCAAATTAACTGCTTGTTACCAAACCATGCATTACACAGCTCGACAGCGAGATGCTTTGCCT
CACTGTTAGCTTGATCGGGATCGATTCACCTCACAGggatcagttgactgttcagatgcccaat
tctccctgcagcacttattccgtaagttaggaaatgaggagtttgttggtcagaggataatcct
tgcaattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATCAGTTGACTGTTCAGATGCCCAATTCTCCCTGCAGCACTTATTCCGTAAGTTAGGAAATG
AGGAGTTTGTTGGTCAGAGGATAATCCTTGCAATTTCTCAAAAGATCTCAAATGTATCAGAAAA
ATTACTTCTGGCAGATCCATTTGATGATGGTTTCCCTGAAATGCATAGCAATATGTTTATTATG
TAAGTTGATTTTCAACTCCTTCAGATAGATTATAACAGAGGAATTTCTGCACAATTTGTCATAA
GATAATGTCCGACTCTGAGCAATATGGTCTGCATACAGTTTTTTTCTCCTCTTTTCTGATAATT
TACTGTACTGTCAGTTGAGATGCAGTCATGTTTTCAGAACATATTTGTCATAATTTTTTGCCCA
ACACAATCTATACTCTGAGATTGCCAGTTGGGCAGTTACAACAACTTGAAGATATTAGACATGA
CATATCTCATCAGAAGAAGAATTTATGATCTCCAGTTCCGTCATACTTGGGGCATGCTTTGTGT
TGTTGCATAATTAGCAAATATTTAATTTGATTTTCTTTACTCCCTGTTTCCTATAAGGATTATT
TCTTTTGTGCCTTACTTTGTTTTTATGTTGCAGGATACAATTAATCGAGTTCCTAATATCTGAC
AGCTTCAACAATTGGCTATGCCGTGATCATTTTGACAGAAGTTAGTCCTCTGTTGCCCTGATGG
CGCTGTTTTATATTTGTTAATTGTTATTCAATGTGAATTGTGCTGCATCCAACATGATAACATG
AAAACAATAAACTATATCCACATATATGTTTTTTCTTCATTCAATTCTTCTGGTTGCAGTTAAA
TATCTTTGGTTTCTACATTGTTCTTTGGAATTGCACTTTATCATCTCATACTAATTATTTGAGT
CGAGTCACAGATTATAAATTGTATAATTCTATCCCTGAATCTGAATAGCTAAATATTGAAAGAT
ACATGCTGATAATGGTGCAAACATAACTCATCATTGCATCTACTATCTCTTTTTGGCATTTCAT
CACATGAGCTTGATCAAATCTAAATACAACATTTATTCAGAACTTTTTGAAGAATGGGTCAGAT
CTATTCTCAAGGCACGAAAGGACTTGGAAGTCCTAGATGGGAGAAACGGACTGTATGTGGTATA
CATTGAGCGAGTGATTGGAAGATTGGCAAGGGAGGTAGCTCCTGCTGCTCATCAGGAGAAGCTG
GACCTAGAAGTCCTCTCCAAACTCCTTTACTGAGAACATGCTGCCTCTGACTCGCCAATGTATT
CACCCACATGTCATTTGGATGGCAATTCTCATGAATTATTAGAGGCTTGTACTCTACAAACTTG
GAAACTAACATATCACATTTTGTATATCAATTTCAGATTTTCAGGATGACTAGCTAAGGGAAGA
TGATGTAGCAAGAAGGTGTTTTGTTCTCCTTTGAATGGCTGGGAAACCAACTACCGAAGCATGC
TCAAAAGTATGTTTCATTAACCCCATGTGTTAATGAGTAGTTATCACAAACCAGTCTGCTATAA
TTTGAAATTGTATTTCTTCACCAAGACCCTTACATGCCTACATTATGGTCTATAAGACAGACCT
TAGAATCTATTAGGGGATCCAATATTGTGATAGGCATTGTTTGGTATGTTTAGCTAATTGTTTT
ACTCTTTACTCCAATTTACTTATGTCATATTTATATATGCATGTTTTATGTCTGCTCTAAAAAA
GGAAGGGAGTTTTTCTTAAATACTTAAGAGGCAATAATGCATCAGCCCCTTTTGTCATGTGTGT
GTGCCGTGCAAAGGGCAGTTTTGTCTATTATGCTTTCATGTACTGTCGTTTTCTTCATTTCTAG
ATGGTGATGTTTAAATTACGGTGTGAACTCTCAATAACAAGAAAATAACTAAGCGTGTTCTGGG
GTGGTGACTTTACTCAACAAGTCAGTTGCTTTACAAATTTGATCTCGTAAGTGCCCCCTTGTGG
CTATATGATGACGTTCTGGAATTAGGATTGCAAATAAACTGCCTAAAACTTTGTGTAGCTGAGA
TAATATAGTACACAGCCTCTCTGTATGTATTCTATACGTGATATTCTCAAATGTTTACACAATG
TAAGTTTATGAAACAATTTTTAATTGAGAAACGTTAAGAAATCAAGTATTCTCTGCTATTTCAG
AGACATATGTTAGGTCCTTATTCTGAAGGGTTATCTAGATTAGAAATTGTTAACAGGGTGTTGG
CTTTAATTATATCTCAGCAACATGGTGCAGACAACATGCACCATGGAAGATTAGGGATGAGTTT
AAAGTCTTAATAGCCAAAGAATATTAGTGTTCTTTCACTCTCGTTTTGGCAAAGAATGAGCTTG
CACTCTTCACCCTAAGAAAAGAGATAGCCCTTCCTAGCTCTAGTTACCAAATCAGTGTTTGAGT
AGTTACATCACCTTTTAGTCAGCAGCTAGCTTAGCTCCATTCTCAACTGGTATAACAACAACTC
TCATGAGCCATGAGGGGAGATAGTAGTTAACCAATCCCAGGATCTTCCGAGTTTTTATCTTGGT
TAAGCTCAACTGATCTCTTCATCCCATTGACAAGACCTGTATGCTTGATCAATGCAAGGTCCTT
TTCAGGTAGGCCAATACCATCCAGCATCTGGCATCTGCTCCAATCAACAAGTGACGTGCACCGC
CGTTTCAGAGCCTAAATCCGGCCTTCTTCCTCAACGGTGAAATATCTGAAATCTGAATCCCAGA
TCTGATGTATTATATCCTTCTTACCATTTTAACATGAACGATTAAAACGACAGGTGCACGTTAC
TGGAAAGGTTAACTCGTTGTCATGTCAGGCTAATAGAGGATGGGTGAAAGCATAACCAGTTTCA
AGAATCAATATCAGCTTTCATTTCAAGTACTCCCTGGAGTTACAGAGGTGGTTTCTATGAGCCC
TAAAGTAAGACCATCTTCGGAATTTATGGACTTCCGTGGCAATCGGTGAGTTCTGATAAAACGT
CAATTGAAATCGTACCATGTATAGTAGTAAAGTTACATAAGGCTGCTTGACTCAATTTATGTTG
CAACTAAAAACTACTTTGTTCCAGACATTCCATTGCTTAGGAAGAATACTAAAACAGCGTTAAT
GCAATTATCAATTCATGCATGTTAGACATAAAGCTTTATTTACTTGAGCTCCAGTTCATAAACT
TACACTCAGAGGCAGCTGATGTAATTTCAATTCAAGTTAACCATGCCTTAGCTGGTACTTGAAC
CCCAAGAAATATAAACTAATGGTATATGCACCAAAATATGTACTCAAGACATGAAAATCTTTCC
TTTCTTGTTTGGGTGGGAGGGGTCACCAGTACTGGACTACTGGTTATAACTATCAATTATACGT
GATAATAACGCGTACATGTCATGATAAGCTGATATGATGGTGACAAGCCCCATTTGTCCATTTG
CCTCATAGGACGGCAGCACCATGTGGTCCATGAGATATCTGAGGCCCCATGAAGCCATAGAGCT
TGCAACAAGCACAGATAGCCCTTGCATTCTTGTGATCGGAGGATGTTTGCCTCTGTTTGTGTCA
CCTACAAAGAAGAAGGAGAAAAAGGAGGCTCTGGAGTGAACTCCACTTGCCTACAAAAGACTTT
TGCTTCTGAATTCTGGTATTAGTTGGGGAGTGGTGTTTAGCACTTGCACGTCAGGATGTGAACA
TGCATTGAGAGGGGGTAGATGCTGCTGCTGTGAGCATTGATGAAGCTTTGCTAATTGGCGACAA
AGAACCAATTATCGACTGGACTTTTGTCCAAAGTGGTTTGCTTTAGTTAGTAGCGAATGCATGC
ATTGCCCTGCCATTGTGTTTCGTCAGCTACATGCTAGGAATATTCAACGAGACAGAGGGGGATG
GTTAGCCAGCTTTGAAATGAGGACTAGAGGAATAGGCTCTCAAATCAGGTCTCCTGATCTGGTT
TGGTGTGCTTCGCGTCCAAATGCAAGAAGCTCTTTGGCTTATACAATATTATTATATATCTATT
GTCGAATTGGTAGCATGCTTAATTCCATGCTGTGTGATTATTGGCACAAAAGTATCTGACAGAC
AGATGGAATCCACCAAGTGAAAAAAAATCACAATAATTAGTAATTAGCTAACTGCACCAAAGAA
ACTATAGCTAGCTACTGAATGTCTGCATGCCCTGACGCACGGGCGGATGGACCCATGAACTGAA
AGCTACAAGATTAACTAAACAAGATCGTGTAGACCTCGACAGGTAAGTGATTGGTAATCACATG
GAGTGTCCTAATAAGTTGCAGATGCCCAAAGGACAAGGACAGGAGAATGTAGAGTACTCCAATA
GTTTTTTGGAATCAATGGTGTGCCTTGGAAAAGTATATAGGACAAACAGTGAGATATAGTCTGA
TAGATCACTCGAGTTCATGACATGAATCCTTGAGCATGCAGAACTACAGAAGTATGATCAACTT
GTTTTTGCATGTTCAAATATAATGCCATGCATAACAGTAGTGTCTGACATGTTTGCTTTCTGTC
ATCTTGTTTTCCTATTATATACGTTCGATATGAGCCCTGTTACTGTCGTGTGGCTAGAATTAAT
TCTGTTAGATGCATGATTCGCGCGTGGCTAGAAATGACATTTGTGTATACATCATCGTTTCTTT
ATCATAATTTCTTGCCATCGTGCCATGGCAAATTAACTGCTTGTTACCAAACCATGCATTACAC
AGCTCGACAGCGAGATGCTTTGCCTCACTGTTAGCTTGATCGGGATCGATTCACCTCACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021